rs232468475 SNP Detail

Summary

• ID
  rs232468475
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:168610741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATAAAAGC ACTTGAAGAT
  TCTGATACCG AGTCAGAAGG CAAATTAACA CCTGCCTTCT CGCTGACTAA TCTACCAATA
  TTCTCCACAC CTTTCTGGGA AAGGAGCAGA GCAGGCGCTA TAACTCACAA ATCTGAAGGA
  ATGTACAGTT TACAACTCAA GAAAGATGAG CCCTTTAAGG GAAGCATTGT GTAATATGGT
  Y
  CTGTTCCTTT ATCTAAGTTA GTGATAGTTA GGGCATAGCA GCTCTATCTG CCCTGGAATG
  AGGTGGGGAC CCTTCGGCCA CGTCAGTCAG GATAGTAATA AGGAGATGAT GAAGATAGCT
  TTCATAAGGC CAAGGTAGGA AGATCTCAAG TTGGAAGGGA GGCCCTGTCT TTTAGAGAGA
  GAGAGATTAG GAGGAGGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356535988	MGP_WTSI_2_168594321	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232468475					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356535988	MGP_WTSI_2_168594321	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:168610741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12778	CpG island 12778	1613 bp distal
Gm14261	predicted gene 14261	711 bp downstream
Rr56145	regulatory region 56145	940 bp distal
Rr374246	regulatory region 374246	within coordinates
Sall4	spalt like transcription factor 4	1620 bp upstream
Tssr27878	transcription start site region 27878	1776 bp upstream
Tssr27879	transcription start site region 27879	1756 bp upstream
Tssr27880	transcription start site region 27880	1738 bp upstream
Tssr27881	transcription start site region 27881	1717 bp upstream
Tssr27882	transcription start site region 27882	1670 bp upstream
Tssr27883	transcription start site region 27883	1659 bp upstream
Tssr27884	transcription start site region 27884	1615 bp upstream
Tssr27885	transcription start site region 27885	1524 bp upstream