rs232486233 SNP Detail

Summary

• ID
  rs232486233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107465906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGACCTGA CAGCCACTTT
  AATGTGGCTT GGGTCTCGGG GCATTTAATA GGGTGGTGAC AGTTCCACAA GAACTAGTAC
  TGAAAGCATA TACTTACCGA GAGTGGTCTT AGAATTATGG CAGGCCCTGT GAGGGGAGCT
  TCTGAGACGG TAAAGAATCT GGCGCAAGGG CCCAGCAGCC AAAGGGACCA CAATACAGTG
  Y
  GGCAGATGAG ACCGTCCGGG CAGTTTTGAC AAGTAGGATA GTAAGAGAAG AGGTGAACAG
  AAATCAACGT GTGGGCTGAA CGTTTTTTTA CAAGCAAGTA ATGTTAGTGG TCCCTAAGGT
  GTAAGGACTC CTACTGGGTC AGAACCTGTC CAGGGTGCCT ACCATAGTAG CTGCCCTATT
  TAAGGCCAGT CTTCAGCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378851179	MGP_WTSI_9_107491038	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232486233					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378851179	MGP_WTSI_9_107491038	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107465906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	419 bp distal
Gm16343	predicted gene 16343	1239 bp upstream
Gm68835	predicted gene, 68835	50 bp upstream
Hyal3	hyaluronoglucosaminidase 3	1348 bp downstream
Ifrd2	interferon-related developmental regulator 2	within coordinates
Rr401663	regulatory region 401663	1069 bp downstream
Rr686552	regulatory region 686552	1055 bp distal
Rr686553	regulatory region 686553	61 bp distal
Rr686554	regulatory region 686554	within coordinates
Rr686555	regulatory region 686555	1577 bp proximal
Tssr87008	transcription start site region 87008	1051 bp downstream
Tssr87009	transcription start site region 87009	1027 bp downstream
Tssr87010	transcription start site region 87010	961 bp downstream
Tssr87011	transcription start site region 87011	906 bp downstream
Tssr87012	transcription start site region 87012	818 bp downstream