rs232486364 SNP Detail

Summary

• ID
  rs232486364
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:72195201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATTAACA GCAACAGGAG
  TGAAGAGATG GACATGGAAC ACATCATGAC CTGGGCCACT GACGTAGCCA AAGGTAACGC
  TGCTTGCTGT GAGCCCTCAG AGGTGGGCAG TGTCTTCCCA CTCTGACCTG AGAGACTCTC
  TCGGAAGTCT TCTATTCTGT GTCTGCAGAC ATTCTTTTTG CAGATCAAAT TTAGTAAAAA
  W
  ATTTCAACTC ACTGTACAAA TATTTTAGGT TATTGCCTTC CCATTACTAA GTTCCCTTTG
  TCTTTCTCTG TTTTCTTAAT CAACCCCCAA AATCAAGTTT TACAAAGTCA GAAAGTTTCA
  GGCCAGAGAT TTTTTTTTTT TTTTTTTTTT TTTTTTGGTG ATACTGTAAT TAACAAACTC
  ACTCACCATA TTAAATGGAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320342076	CHEV_2_72202914	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232486364					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72195201 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Map3k20	mitogen-activated protein kinase kinase kinase 20			Intron
				Noncoding-Transcript-Variant
Rr558961	regulatory region 558961			992 bp proximal
Rr558962	regulatory region 558962			1673 bp proximal
Tssr18337	transcription start site region 18337			155 bp upstream