rs232499073 SNP Detail

Summary

• ID
  rs232499073
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29984380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAGTACCC GCGTCTTAGA
  CAGGTATTTG TCTCCCCTGC TACCACCACG GCCCAACCAG ACTGACTTTC TCTCCTTGTG
  TTCCTTGAAC CTCCCCCATT CAGCTGACTT CCACCTGATG ACCCTCTTCT AGCCCAAAGC
  CCAGTGTGCA TGCTCTTGGG ATTTGTTTTG GTCAAATAGA CATCCCTTTT TCTGAAGAAC
  Y
  GACTTCCTAT GGCCAGGGTG GTTATGGAAG GATTGGTTGT CCATCGTGTG TGCGCGCGCA
  CGCACCCGCG CGAGTGTGTA TTGGGGGACG GGGGGACGGG GGGCGGTTAG GGCCAATCAT
  ACTATTCCAT ATGAGATTAA ACAGAGGCTG GGGATTAACA CAATTGGTAG ACTGTCTAGC
  AAGCACTAAA GGCTGGGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353509311	MGP_WTSI_2_29949888	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232499073					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353509311	MGP_WTSI_2_29949888	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29984380 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11425	CpG island 11425	281 bp distal
Rr396857	regulatory region 396857	514 bp downstream
Rr554214	regulatory region 554214	230 bp distal
Rr554215	regulatory region 554215	1496 bp proximal
Rr554216	regulatory region 554216	1691 bp proximal
Tssr23344	transcription start site region 23344	824 bp upstream
Tssr23345	transcription start site region 23345	765 bp upstream
Tssr23346	transcription start site region 23346	727 bp upstream
Tssr23347	transcription start site region 23347	689 bp upstream
Zdhhc12	zinc finger, DHHC domain containing 12	733 bp upstream