rs232512082 SNP Detail

Summary

• ID
  rs232512082
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166905002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGCGCGGC GGAGGGGAGG
  GCGCGGCGGG GGGCGGGTTG ACTGCGCCCC GGGCGGCCGC AGGTCTCGGC TGGCCCCGGA
  GCCAGGGGGA CGCGGCGGGC GGCTCGTGCG TGCCAAGCGC GACATGGCGC GGAAGCCGAG
  AAGCCCCGGA GGCCCAGTGA GCACGGGGAG GGGCTAGACA CTGGCTGGAC AACCATTAGC
  K
  AGCTGGGGCC GGGCGGCTCG GGGACTACAT TTCCCAGGAC GCCAAGCGGT CGCGCCCGGA
  AGCGACGCGC CATGGGCACA GTGCGCAGGC GCACGCGCCG CCAAGGTCTA TATAAGGAAG
  GTTCGCCGCC GCTCTCGTCC TTTCGTTCCG GCGGCTCCTA GAGCGTTTGC TTTGTTCCCG
  ATATGTCTCG TCCCTCCGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356497156	MGP_WTSI_2_166888582	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232512082					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356497156	MGP_WTSI_2_166888582	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166905002 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12730	CpG island 12730	within coordinates
Gm23201	predicted gene, 23201	1916 bp upstream
Gm25878	predicted gene, 25878	391 bp upstream
Gm56406	predicted gene, 56406	within coordinates
Gm75600	predicted gene, 75600	1969 bp downstream
Rr397500	regulatory region 397500	48 bp upstream
Rr570439	regulatory region 570439	1192 bp distal
Rr570440	regulatory region 570440	78 bp distal
Rr570441	regulatory region 570441	within coordinates
Rr570442	regulatory region 570442	1273 bp proximal
Rr570443	regulatory region 570443	1476 bp proximal
Rr570444	regulatory region 570444	1540 bp proximal
Tssr21787	transcription start site region 21787	1793 bp downstream
Tssr21788	transcription start site region 21788	1780 bp downstream
Tssr21789	transcription start site region 21789	228 bp downstream
Tssr21790	transcription start site region 21790	131 bp upstream
Tssr27740	transcription start site region 27740	477 bp upstream
Tssr27741	transcription start site region 27741	358 bp upstream
Tssr27742	transcription start site region 27742	337 bp upstream
Tssr27743	transcription start site region 27743	209 bp upstream
Tssr27744	transcription start site region 27744	34 bp upstream
Zfas1	zinc finger, NFX1-type containing 1, antisense RNA 1	within coordinates
Znfx1	zinc finger, NFX1-type containing 1	76 bp upstream