About   Help   FAQ
rs232540882 SNP Detail
Summary
  • ID
    rs232540882
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr19:44385689 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCCCCTTCAC TCTGAAAATG
ATTTAATTAT TCAAATCTCA CTAATCTCTG GGGTTCAGAG GATGGACAGA AAGGAGGCAT
GCCAAGCAGA GAGGCCTGGG GTCTTTGGTA AGTAGGCTGT TAGATATGGC TACCTCTCTC
TCTCTCTCTC TCTCTCTCTC TCTCTCTCTC TCTTCCATCT TTACTTACAA ATCATACCAC
R
CATGCTAACT TTTCTCTCGA GACAATCTAC TTGCTCTGTA TCAAATGAAG ATAATTTCTC
CATCCCATCT AGCACAACCT GCAGTGAACT TCATCAGCGG GGACTTGCTC TATCCCTAGT
TTGAGGCAGC AGTCTTGAAG CTAGGAACAA GGAGGGATGT ATTCAGGAGG AAGGATCAGT
ATTTCAGAAA ACAGAAAGGT                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss402552118 MGP_WTSI_19_44471740 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232540882 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss402552118 MGP_WTSI_19_44471740 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr19:44385689 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
D19Mit67 DNA segment, Chr 19, Massachusetts Institute of Technology 67 within coordinates
D19Mit67.2 DNA segment, Chr 19, Massachusetts Institute of Technology 67.2 80 bp distal
D19Nds1 DNA segment, Chr 19, Nuffield Department of Surgery 1 within coordinates
Rr548237 regulatory region 548237 1832 bp distal
Rr548238 regulatory region 548238 169 bp distal
Rr548239 regulatory region 548239 1464 bp proximal
Scd1 stearoyl-Coenzyme A desaturase 1 within coordinates
Tssr5524 transcription start site region 5524 886 bp upstream
Tssr156606 transcription start site region 156606 824 bp downstream
Tssr156607 transcription start site region 156607 503 bp downstream
Tssr156608 transcription start site region 156608 88 bp downstream
Tssr156609 transcription start site region 156609 101 bp upstream
Tssr159453 transcription start site region 159453 1936 bp upstream
Tssr159454 transcription start site region 159454 1917 bp upstream
Tssr159455 transcription start site region 159455 1611 bp upstream
Tssr159456 transcription start site region 159456 1492 bp upstream
Tssr159457 transcription start site region 159457 1463 bp upstream
Tssr159458 transcription start site region 159458 1429 bp upstream
Tssr159459 transcription start site region 159459 1337 bp upstream
Tssr159460 transcription start site region 159460 1301 bp upstream
Tssr159461 transcription start site region 159461 1240 bp upstream
Tssr159462 transcription start site region 159462 1208 bp upstream
Tssr159463 transcription start site region 159463 1169 bp upstream
Tssr159464 transcription start site region 159464 1139 bp upstream
Tssr159465 transcription start site region 159465 1119 bp upstream
Tssr159466 transcription start site region 159466 1101 bp upstream
Tssr159467 transcription start site region 159467 1037 bp upstream
Tssr159468 transcription start site region 159468 791 bp upstream
Tssr159469 transcription start site region 159469 726 bp upstream
Tssr159470 transcription start site region 159470 712 bp upstream
Tssr159471 transcription start site region 159471 679 bp upstream
Tssr159472 transcription start site region 159472 653 bp upstream
Tssr159473 transcription start site region 159473 634 bp upstream
Tssr159474 transcription start site region 159474 612 bp upstream
Tssr159475 transcription start site region 159475 565 bp upstream
Tssr159476 transcription start site region 159476 547 bp upstream
Tssr159477 transcription start site region 159477 538 bp upstream
Tssr159478 transcription start site region 159478 517 bp upstream
Tssr159479 transcription start site region 159479 499 bp upstream
Tssr159480 transcription start site region 159480 467 bp upstream
Tssr159481 transcription start site region 159481 408 bp upstream
Tssr159482 transcription start site region 159482 320 bp upstream
Tssr159483 transcription start site region 159483 222 bp upstream
Tssr159484 transcription start site region 159484 195 bp upstream
Tssr159485 transcription start site region 159485 77 bp upstream
Tssr159486 transcription start site region 159486 63 bp upstream
Tssr159487 transcription start site region 159487 8 bp downstream
Tssr159488 transcription start site region 159488 25 bp downstream
Tssr159489 transcription start site region 159489 79 bp downstream
Tssr159490 transcription start site region 159490 181 bp downstream
Tssr159491 transcription start site region 159491 216 bp downstream
Tssr159492 transcription start site region 159492 267 bp downstream
Tssr159493 transcription start site region 159493 293 bp downstream
Tssr159494 transcription start site region 159494 313 bp downstream
Tssr159495 transcription start site region 159495 431 bp downstream
Tssr159496 transcription start site region 159496 501 bp downstream
Tssr159497 transcription start site region 159497 514 bp downstream
Tssr159498 transcription start site region 159498 526 bp downstream
Tssr159499 transcription start site region 159499 556 bp downstream
Tssr159500 transcription start site region 159500 587 bp downstream
Tssr159501 transcription start site region 159501 602 bp downstream
Tssr159502 transcription start site region 159502 638 bp downstream
Tssr159503 transcription start site region 159503 651 bp downstream
Tssr159504 transcription start site region 159504 730 bp downstream
Tssr159505 transcription start site region 159505 843 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory