rs232543469 SNP Detail

Summary

• ID
  rs232543469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:181667978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGGACAA AGAGGAAGGA
  AATGTGCTGG GCTTCCTTCT CTGAATCCCC ACCTCTCTTC CTCCCCAGAT CAATTAGGTT
  CTCCTACTCT TTCCAAAGTT TGAGAAAGCC CACAATGTCT TTCTATATGA AGGTGCCAGT
  AGGATCTCAA ACAACACTTC AAAAACTTGC AATAGGAGCA CTTTGTGGCT TGGGGACCGC
  Y
  TGCATCTTTA AAAGGCCCTG GAACAGATTT ATTCTGAACT ATCAGAAGCA TCCAATCCTT
  GCCATTCATC CCATCCAGGT ACTAACCACG TCTGATCCTG TTTGGCTTCA GAGATCTGAT
  GAAATCCAGA GGATTAGAAT GGTATGGCCC TAGACTCACT GCTGTTTCTC TACTGCATCT
  TGAAGACACC ACATTAACTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352618106	MGP_WTSI_1_183770544	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232543469					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352618106	MGP_WTSI_1_183770544	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:181667978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1138	CpG island 1138	1079 bp proximal
Gm55354	predicted gene, 55354	40 bp downstream
Lbr	lamin B receptor	within coordinates
Rr396678	regulatory region 396678	1808 bp upstream
Rr424801	regulatory region 424801	157 bp distal
Rr424802	regulatory region 424802	36 bp proximal
Rr424803	regulatory region 424803	621 bp proximal
Rr424804	regulatory region 424804	1956 bp proximal
Tssr15588	transcription start site region 15588	600 bp downstream
Tssr15589	transcription start site region 15589	1894 bp downstream
Tssr15590	transcription start site region 15590	1921 bp downstream