rs232544042 SNP Detail

Summary

• ID
  rs232544042
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84466122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTAGGGCT TGGAGCTTGG
  AAAAAAGATG AGTGATCAAA CCAGGCCAGA GAAAGGACAG TAGACTCAAG TAATAGTTAC
  CCAAGTCAGG GGGGTTCCTT GTCCCCTGGG CTGGGCTGGG CTCTACCCCA CCATGCTAAA
  GGCATCAGCC AGACCGCCTA CATCTGGAGA CTTGGAAATT AATCAAACGG GAGCAGAGCC
  R
  TTCCCTTCTG CTCCCAGACA CATCTGGTTC AACTTCCCAA GCTCAGACTG GAGCCAAGGG
  ACTCCTGCTT AGAGAATCCA GAAGTGGGGG TAGGGCAGCC TTTGTGCTTC CTGCAGTATT
  TCATTGTGTA GTTCCGGCTG GCCTGGAACT TACTATGTAG ACCAGGTTGG CCTCCAACTC
  CCAGGATCAT GGAAGCCTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375384443	MGP_WTSI_8_86263392	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232544042					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375384443	MGP_WTSI_8_86263392	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84466122 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	within coordinates
Cpgi20655	CpG island 20655	1385 bp proximal
Gm46046	predicted gene, 46046	1793 bp upstream
Rr368559	regulatory region 368559	444 bp upstream
Tssr2618	transcription start site region 2618	613 bp downstream
Tssr2619	transcription start site region 2619	897 bp upstream
Tssr2620	transcription start site region 2620	1783 bp upstream
Tssr78289	transcription start site region 78289	1072 bp downstream
Tssr78290	transcription start site region 78290	1044 bp downstream
Tssr78291	transcription start site region 78291	844 bp upstream
Tssr78292	transcription start site region 78292	870 bp upstream
Tssr78293	transcription start site region 78293	988 bp upstream
Tssr78294	transcription start site region 78294	1071 bp upstream
Tssr78295	transcription start site region 78295	1122 bp upstream
Tssr78296	transcription start site region 78296	1142 bp upstream
Tssr78297	transcription start site region 78297	1895 bp upstream
Tssr82049	transcription start site region 82049	568 bp downstream
Tssr82050	transcription start site region 82050	653 bp downstream
Tssr82051	transcription start site region 82051	934 bp downstream
Tssr82052	transcription start site region 82052	1680 bp downstream