rs232558071 SNP Detail

Summary

• ID
  rs232558071
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:79286024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCCAATTT TTAAAGAAGA TTATATGGAA
  GGGAGAGCCA ATGCACAGAG GAGGAAAGGT AGTTTCCATC AAATTATTTT CCTATCGACA
  ACACATTTGG CCACAGAAGT GGGCACAAGT CTTCCATCCC TCTCTTGCCT TTCTTTCTTT
  S
  CCTCACCACC CCCCCCCCAC GCCCCCGCTA AATTCCCACC TTGTACAAAA GCTCTGGCTC
  CCAGGCGAGG CTCTCCCACG CGCTGGGGAT CAGGTGCAAA AGGCTCCTCT CTAATAAACA
  GCCCATTGAA AGGGCCGCCC GCTCTTTATT                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320360522	CHEV_2_79295837	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232558071					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:79286024 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11842	CpG island 11842	785 bp distal
Cpgi11843	CpG island 11843	875 bp proximal
Neurod1	neurogenic differentiation 1	within coordinates
Rr373416	regulatory region 373416	351 bp downstream
Tssr24893	transcription start site region 24893	1720 bp upstream
Tssr24894	transcription start site region 24894	1405 bp upstream
Tssr24895	transcription start site region 24895	1364 bp upstream
Tssr24896	transcription start site region 24896	1288 bp upstream
Tssr24897	transcription start site region 24897	1006 bp upstream
Tssr24898	transcription start site region 24898	970 bp upstream
Tssr24899	transcription start site region 24899	718 bp upstream
Tssr24900	transcription start site region 24900	708 bp upstream
Tssr24901	transcription start site region 24901	688 bp upstream
Tssr24902	transcription start site region 24902	649 bp upstream
Tssr24903	transcription start site region 24903	591 bp upstream
Tssr24904	transcription start site region 24904	621 bp downstream
Tssr24905	transcription start site region 24905	946 bp downstream
Tssr24906	transcription start site region 24906	1070 bp downstream