rs232558292 SNP Detail

Summary

• ID
  rs232558292
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130545141 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTTCCTC CCAAAGGCTC
  TGGGAGGTGG GCACAGGCAG TCAGTGTGGT CATGAAGCTG CTAACTGAGG GAGCGCGCTG
  AGATGGACCC AGCCTGGGGA TGGATGTGTG ACCACTGTTC CAGGCTCCTG CTCCTTCCTG
  AGCCGCCTGA CTTAGCTCTG CCGCTAGTCT CCCTCCAACT CTGCTTTAAG CCTCTCCCTC
  M
  GGAAACTGGT GCCCTCCTCT AAAATGTCAC TGTTCTCAGG AGGCAGAGGC AGAGGCAGGC
  GGATTTCTGA GTTCAAGGCC AGCCTGGTCG ACAAAGTGAG TTCCAGGACA GCCAGGGCTA
  CACAGAGAAA CCTTGTCTTG AAAAAACAAA CAAACAAAAA CCCCCAAAAC AAACAAAAAC
  CAACCAACCA AACAAAAATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318834	CHEV_4_130373745	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232558292					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130545141 () rs orientation: forward

Symbol	Name	Function Class
Sdc3	syndecan 3	within coordinates
Tssr39263	transcription start site region 39263	977 bp downstream
Tssr39264	transcription start site region 39264	919 bp downstream
Tssr39265	transcription start site region 39265	761 bp upstream
Tssr39266	transcription start site region 39266	783 bp upstream
Tssr39267	transcription start site region 39267	801 bp upstream
Tssr39268	transcription start site region 39268	825 bp upstream
Tssr39269	transcription start site region 39269	872 bp upstream
Tssr39270	transcription start site region 39270	897 bp upstream
Tssr39271	transcription start site region 39271	936 bp upstream
Tssr39272	transcription start site region 39272	958 bp upstream
Tssr39273	transcription start site region 39273	1018 bp upstream
Tssr39274	transcription start site region 39274	1060 bp upstream
Tssr39275	transcription start site region 39275	1076 bp upstream
Tssr39276	transcription start site region 39276	1112 bp upstream
Tssr39277	transcription start site region 39277	1128 bp upstream
Tssr39278	transcription start site region 39278	1141 bp upstream
Tssr43599	transcription start site region 43599	859 bp downstream
Tssr43600	transcription start site region 43600	882 bp downstream
Tssr43601	transcription start site region 43601	939 bp downstream