rs232559346 SNP Detail

Summary

• ID
  rs232559346
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85416013 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTTGCCAA CATGGCGGCT CCCAGGCCCT AATGCGAGAA
  GCATGCACCG TGACTCGTTG GATCCTGTGA GCGGAAGGGA GACGCTTGTC CGGGTGGGTG
  T
  GTGGGTGGGT GGGTGTGTGG GTGTGGTGGG AAACCTGAGC CGAAGAGAGA AGTTTGTCCG
  GGTGTGTGTG TTGGGAAATC TGAGCCGCGG GCCTTAGCC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322751351	CHEV_8_87213283	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232559346					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85416013 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20705	CpG island 20705	1348 bp distal
Cpgi20706	CpG island 20706	97 bp proximal
Nacc1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	1485 bp upstream
Rr666573	regulatory region 666573	1493 bp distal
Rr666575	regulatory region 666575	1149 bp distal
Rr666576	regulatory region 666576	within coordinates
Rr666577	regulatory region 666577	141 bp distal
Rr666578	regulatory region 666578	408 bp proximal
Trmt1	tRNA methyltransferase 1	within coordinates
Tssr78430	transcription start site region 78430	81 bp downstream
Tssr78431	transcription start site region 78431	66 bp downstream
Tssr82112	transcription start site region 82112	1813 bp upstream
Tssr82113	transcription start site region 82113	1765 bp upstream
Tssr82114	transcription start site region 82114	1500 bp upstream
Tssr82115	transcription start site region 82115	1474 bp upstream