rs232560997 SNP Detail

Summary

• ID
  rs232560997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96679249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGGA AAACTTTGAA TGTGGTGGTC
  Y
  GTGTTTGTAA TACTCGGCAT TTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323822798	CHEV_11_96649737	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232560997					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96679249 () rs orientation: forward

Symbol	Name	Function Class
Cbx1	chromobox 1	704 bp upstream
Cpgi3668	CpG island 3668	417 bp proximal
Rr455508	regulatory region 455508	284 bp proximal
Rr455509	regulatory region 455509	837 bp proximal
Tssr104569	transcription start site region 104569	695 bp upstream
Tssr104570	transcription start site region 104570	726 bp upstream
Tssr104571	transcription start site region 104571	790 bp upstream
Tssr104572	transcription start site region 104572	812 bp upstream
Tssr110346	transcription start site region 110346	565 bp downstream