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rs232570468 SNP Detail
Summary
  • ID
    rs232570468
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr7:19429980 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAATCTTAAA TAAATAAATA
AATAAAATGA GCCCATGCCT AGAATCCAGG GGTAGGGGGC GGTGAAGAGC CCCAGAGGCT
GTGGGTGTGG CTCAGTGGTA GAGCTACTGA CTAGAATTCC CGTAGTGAGG GGCTGGAGGG
GCGTGACTCA GTGGTAGATA TGATTCCCCA GTGAGGGGCT GCGGGTGGCT CAGTGGTAGA
R
CCCCTGCCTA GAATCCCCCA GTGAGGGGCT GTGGGCGTGG CTCAGTGGTA GATCACTTGT
TCTTTTATGT TGCTAGGTCC TAGGCTTCAT TTCTATTGCT GCAAAACCAC CTCCCTCTAC
AGATAGTGAC AGGGCCATGG AATGTGTGCT AGGTAAGGCA AAAAACAATA AACTGAGGCT
GAAGCTGATT GGAATCACTC                                            

R = A/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss370754790 MGP_WTSI_7_20281404 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G A G A G G G G G G G A G A G G G G A G G G A G A A G A G A G A G G A G G A G G G G
SNP Consensus Information
SNP Consensus Type
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232570468 SNP G G G G G A G A G G G G G G G A G A G G G G A G G G A G A A G A G A G A G G A G G A G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss370754790 MGP_WTSI_7_20281404 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:19429980 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Apoe apolipoprotein E 54 bp downstream
Cpgi18507 CpG island 18507 466 bp proximal
D7Mit57 DNA segment, Chr 7, Massachusetts Institute of Technology 57 1716 bp proximal
Gm71725 predicted gene, 71725 1063 bp upstream
Rr643239 regulatory region 643239 519 bp distal
Rr643240 regulatory region 643240 396 bp proximal
Rr643241 regulatory region 643241 581 bp proximal
Tssr2112 transcription start site region 2112 396 bp upstream
Tssr2113 transcription start site region 2113 421 bp upstream
Tssr2114 transcription start site region 2114 536 bp upstream
Tssr2115 transcription start site region 2115 572 bp upstream
Tssr2116 transcription start site region 2116 647 bp upstream
Tssr2117 transcription start site region 2117 669 bp upstream
Tssr2118 transcription start site region 2118 776 bp upstream
Tssr2119 transcription start site region 2119 785 bp downstream
Tssr2120 transcription start site region 2120 848 bp upstream
Tssr2121 transcription start site region 2121 880 bp upstream
Tssr2122 transcription start site region 2122 1600 bp downstream
Tssr64880 transcription start site region 64880 213 bp upstream
Tssr64881 transcription start site region 64881 265 bp upstream
Tssr64882 transcription start site region 64882 309 bp upstream
Tssr64883 transcription start site region 64883 347 bp upstream
Tssr64884 transcription start site region 64884 374 bp upstream
Tssr64885 transcription start site region 64885 453 bp upstream
Tssr64886 transcription start site region 64886 474 bp upstream
Tssr64887 transcription start site region 64887 506 bp upstream
Tssr64888 transcription start site region 64888 725 bp upstream
Tssr64889 transcription start site region 64889 819 bp upstream
Tssr64890 transcription start site region 64890 865 bp upstream
Tssr64891 transcription start site region 64891 888 bp upstream
Tssr64892 transcription start site region 64892 921 bp upstream
Tssr64893 transcription start site region 64893 956 bp upstream
Tssr64894 transcription start site region 64894 1410 bp upstream
Tssr64895 transcription start site region 64895 1506 bp upstream
Tssr64896 transcription start site region 64896 1532 bp upstream
Tssr70973 transcription start site region 70973 237 bp downstream
Tssr70974 transcription start site region 70974 283 bp downstream
Tssr70975 transcription start site region 70975 311 bp downstream
Tssr70976 transcription start site region 70976 346 bp downstream
Tssr70977 transcription start site region 70977 394 bp downstream
Tssr70978 transcription start site region 70978 409 bp downstream
Tssr70979 transcription start site region 70979 433 bp downstream
Tssr70980 transcription start site region 70980 443 bp downstream
Tssr70981 transcription start site region 70981 464 bp downstream
Tssr70982 transcription start site region 70982 478 bp downstream
Tssr70983 transcription start site region 70983 511 bp downstream
Tssr70984 transcription start site region 70984 528 bp downstream
Tssr70985 transcription start site region 70985 593 bp downstream
Tssr70986 transcription start site region 70986 626 bp downstream
Tssr70987 transcription start site region 70987 656 bp downstream
Tssr70988 transcription start site region 70988 700 bp downstream
Tssr70989 transcription start site region 70989 739 bp downstream
Tssr70990 transcription start site region 70990 751 bp downstream
Tssr70991 transcription start site region 70991 796 bp downstream
Tssr70992 transcription start site region 70992 804 bp downstream
Tssr70993 transcription start site region 70993 813 bp downstream
Tssr70994 transcription start site region 70994 854 bp downstream
Tssr70995 transcription start site region 70995 859 bp downstream
Tssr70996 transcription start site region 70996 892 bp downstream
Tssr70997 transcription start site region 70997 926 bp downstream
Tssr70998 transcription start site region 70998 988 bp downstream
Tssr70999 transcription start site region 70999 1006 bp downstream
Tssr71000 transcription start site region 71000 1449 bp downstream
Tssr71001 transcription start site region 71001 1479 bp downstream
Tssr71002 transcription start site region 71002 1539 bp downstream
Tssr71003 transcription start site region 71003 1557 bp downstream
Tssr71004 transcription start site region 71004 1585 bp downstream
Tssr71005 transcription start site region 71005 1936 bp downstream
Tssr71006 transcription start site region 71006 1969 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory