rs232575288 SNP Detail

Summary

• ID
  rs232575288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:36566977 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCAACACA AGATACTCCA
  GATAGAGGTG TTAAACAGCC AGTCCAGTTT GGAAACTAAG CAAGAAAACA TTCTATCACG
  ACACAAATGT GTGAAATACT ATCTTTCTGT GCTCACTGAA CTCCACAGAG CCATAGAAGG
  GCAGTTTTTC CTAGGGCCAA GCCTAGAGGC ACGGCCATCA CCTTTCCATA TTCCCTTCCC
  R
  GGAAGCATTC TCTTTAATCA AACAGCACAC TTGTAAGGAA CTTCCCCTAT GCCCACCAAG
  GTAATTTAAA AACCAACTTA AATACGTCGG GTAACGCTTG TCAAAAACCT GGATAGGACT
  CAGATTTCTG GTCACGCTTA ATTTCAAAAG TTGGCTTATT TGTATTATAT TTCTCCATTC
  TCAAATATCA GTTCATTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323643772	CHEV_11_36489652	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232575288					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:36566977 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2736	CpG island 2736	1276 bp proximal
Rr233627	regulatory region 233627	977 bp distal
Rr246545	regulatory region 246545	within coordinates
Tenm2	teneurin transmembrane protein 2	within coordinates
Tssr107449	transcription start site region 107449	1341 bp downstream
Tssr107450	transcription start site region 107450	1531 bp downstream
Tssr107451	transcription start site region 107451	1581 bp downstream
Tssr107452	transcription start site region 107452	1622 bp downstream
Tssr107453	transcription start site region 107453	1668 bp downstream
Tssr107454	transcription start site region 107454	1717 bp downstream
Tssr107455	transcription start site region 107455	1763 bp downstream
Tssr107456	transcription start site region 107456	1800 bp downstream