rs232584415 SNP Detail

Summary

• ID
  rs232584415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80412663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGCCCCC CACGCGCCAC
  GCAGTTTCGG GGTTCCAAGT GAGATGGGGG AACGGGGTCC CCGAGACCTC TCTAATGCAC
  TCCCTGCATC CCACCTGTGT AAAATACGAG GGGCTTACCT GTGTGAGTCC GCAGGTGTGA
  CTTGAGGTGC GAAGACTTGT AATAGGCTTT GGCGCAGCCA TGGAAGGGAC AGCGGTGGCT
  Y
  TTGGCGGCGC CGGGGGCGCG GCCCGAAGAG GGAGACGAAG CGGCTGAGGA GGAGGAGACC
  GGAGAGGTGC CCCCCGCGGT GCTGGCTGCG GTGGCGACTA CCGGCCCGCC TCTCAGATCG
  GCCAGGATGC TGGCGGCCAG CAGGTGGGGC GCAGCGGTGG CGCCTCCCGG CCCCGGAGCC
  GTAGCTGGCG GTGGCGGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381021702	MGP_WTSI_10_80039574	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232584415					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381021702	MGP_WTSI_10_80039574	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80412663 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1896	CpG island 1896	within coordinates
Gm26710	predicted gene, 26710	1295 bp upstream
Klf16	Kruppel-like transcription factor 16	within coordinates
Rr402055	regulatory region 402055	1610 bp upstream
Rr435299	regulatory region 435299	1074 bp distal
Rr435300	regulatory region 435300	482 bp proximal
Rr435301	regulatory region 435301	647 bp proximal
Rr435302	regulatory region 435302	1248 bp proximal
Rr435303	regulatory region 435303	1753 bp proximal
Tssr98472	transcription start site region 98472	426 bp downstream
Tssr98473	transcription start site region 98473	456 bp downstream