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rs232592767 SNP Detail
Summary
  • ID
    rs232592767
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44127645 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          AACTC TTCATCTTTC TCCTCTGCCA
Y
TCCCCTCTTC TCCTCACTCT TGTCC                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss641462003 FVB_NJ_7_51733591 EVA_MGPV3 EVA_MGPV3 f SNP C C C T C T T T C C C C T T T T T T C T C T C C C C C C T T C C C T C C T T C C C T C C T T C T C T C T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232592767 SNP C C C T C T T T C C C C T T T T T T C T C T C C C C C C T T C C C T C C T T C C C T C C T T C T C T C T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss641462003 FVB_NJ_7_51733591 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44127645 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2222 transcription start site region 2222 1867 bp downstream
Tssr2223 transcription start site region 2223 1688 bp downstream
Tssr2224 transcription start site region 2224 842 bp downstream
Tssr2225 transcription start site region 2225 802 bp downstream
Tssr2226 transcription start site region 2226 276 bp downstream
Tssr2227 transcription start site region 2227 790 bp upstream
Tssr2228 transcription start site region 2228 1857 bp upstream
Tssr66210 transcription start site region 66210 1979 bp downstream
Tssr66211 transcription start site region 66211 1939 bp downstream
Tssr66212 transcription start site region 66212 1896 bp downstream
Tssr66213 transcription start site region 66213 1881 bp downstream
Tssr66214 transcription start site region 66214 1849 bp downstream
Tssr66215 transcription start site region 66215 1819 bp downstream
Tssr66216 transcription start site region 66216 1772 bp downstream
Tssr66217 transcription start site region 66217 1700 bp downstream
Tssr66218 transcription start site region 66218 1646 bp downstream
Tssr66219 transcription start site region 66219 1604 bp downstream
Tssr66220 transcription start site region 66220 1570 bp downstream
Tssr66221 transcription start site region 66221 1551 bp downstream
Tssr66222 transcription start site region 66222 1498 bp downstream
Tssr66223 transcription start site region 66223 1431 bp downstream
Tssr66224 transcription start site region 66224 1408 bp downstream
Tssr66225 transcription start site region 66225 1388 bp downstream
Tssr66226 transcription start site region 66226 1375 bp downstream
Tssr66227 transcription start site region 66227 1334 bp downstream
Tssr66228 transcription start site region 66228 1331 bp downstream
Tssr66229 transcription start site region 66229 1318 bp downstream
Tssr66230 transcription start site region 66230 1298 bp downstream
Tssr66231 transcription start site region 66231 1263 bp downstream
Tssr66232 transcription start site region 66232 1251 bp downstream
Tssr66233 transcription start site region 66233 1229 bp downstream
Tssr66234 transcription start site region 66234 1199 bp downstream
Tssr66235 transcription start site region 66235 1179 bp downstream
Tssr66236 transcription start site region 66236 1152 bp downstream
Tssr66237 transcription start site region 66237 1131 bp downstream
Tssr66238 transcription start site region 66238 1112 bp downstream
Tssr66239 transcription start site region 66239 1061 bp downstream
Tssr66240 transcription start site region 66240 980 bp downstream
Tssr66241 transcription start site region 66241 968 bp downstream
Tssr66242 transcription start site region 66242 888 bp downstream
Tssr66243 transcription start site region 66243 874 bp downstream
Tssr66244 transcription start site region 66244 823 bp downstream
Tssr66245 transcription start site region 66245 761 bp downstream
Tssr66246 transcription start site region 66246 733 bp downstream
Tssr66247 transcription start site region 66247 686 bp downstream
Tssr66248 transcription start site region 66248 645 bp downstream
Tssr66249 transcription start site region 66249 622 bp downstream
Tssr66250 transcription start site region 66250 603 bp downstream
Tssr66251 transcription start site region 66251 578 bp downstream
Tssr66252 transcription start site region 66252 547 bp downstream
Tssr66253 transcription start site region 66253 519 bp downstream
Tssr66254 transcription start site region 66254 471 bp downstream
Tssr66255 transcription start site region 66255 444 bp downstream
Tssr66256 transcription start site region 66256 395 bp downstream
Tssr66257 transcription start site region 66257 384 bp downstream
Tssr66258 transcription start site region 66258 341 bp downstream
Tssr66259 transcription start site region 66259 305 bp downstream
Tssr66260 transcription start site region 66260 198 bp downstream
Tssr66261 transcription start site region 66261 177 bp downstream
Tssr66262 transcription start site region 66262 170 bp downstream
Tssr66263 transcription start site region 66263 158 bp downstream
Tssr66264 transcription start site region 66264 134 bp downstream
Tssr66265 transcription start site region 66265 91 bp downstream
Tssr66266 transcription start site region 66266 74 bp downstream
Tssr66267 transcription start site region 66267 37 bp downstream
Tssr66268 transcription start site region 66268 21 bp downstream
Tssr66269 transcription start site region 66269 within coordinates
Tssr66270 transcription start site region 66270 43 bp upstream
Tssr66271 transcription start site region 66271 61 bp upstream
Tssr66272 transcription start site region 66272 127 bp upstream
Tssr66273 transcription start site region 66273 139 bp upstream
Tssr66274 transcription start site region 66274 154 bp upstream
Tssr66275 transcription start site region 66275 162 bp upstream
Tssr66276 transcription start site region 66276 191 bp upstream
Tssr66277 transcription start site region 66277 199 bp upstream
Tssr66278 transcription start site region 66278 231 bp upstream
Tssr66279 transcription start site region 66279 278 bp upstream
Tssr66280 transcription start site region 66280 317 bp upstream
Tssr66281 transcription start site region 66281 348 bp upstream
Tssr66282 transcription start site region 66282 374 bp upstream
Tssr66283 transcription start site region 66283 388 bp upstream
Tssr66284 transcription start site region 66284 405 bp upstream
Tssr66285 transcription start site region 66285 420 bp upstream
Tssr66286 transcription start site region 66286 457 bp upstream
Tssr66287 transcription start site region 66287 475 bp upstream
Tssr66288 transcription start site region 66288 511 bp upstream
Tssr66289 transcription start site region 66289 559 bp upstream
Tssr66290 transcription start site region 66290 620 bp upstream
Tssr66291 transcription start site region 66291 649 bp upstream
Tssr66292 transcription start site region 66292 687 bp upstream
Tssr66293 transcription start site region 66293 705 bp upstream
Tssr66294 transcription start site region 66294 726 bp upstream
Tssr66295 transcription start site region 66295 1011 bp upstream
Tssr66296 transcription start site region 66296 1144 bp upstream
Tssr66297 transcription start site region 66297 1187 bp upstream
Tssr66298 transcription start site region 66298 1212 bp upstream
Tssr66299 transcription start site region 66299 1281 bp upstream
Tssr66300 transcription start site region 66300 1288 bp upstream
Tssr66301 transcription start site region 66301 1312 bp upstream
Tssr66302 transcription start site region 66302 1326 bp upstream
Tssr66303 transcription start site region 66303 1367 bp upstream
Tssr66304 transcription start site region 66304 1375 bp upstream
Tssr66305 transcription start site region 66305 1385 bp upstream
Tssr66306 transcription start site region 66306 1419 bp upstream
Tssr66307 transcription start site region 66307 1476 bp upstream
Tssr66308 transcription start site region 66308 1529 bp upstream
Tssr66309 transcription start site region 66309 1550 bp upstream
Tssr66310 transcription start site region 66310 1588 bp upstream
Tssr66311 transcription start site region 66311 1665 bp upstream
Tssr66312 transcription start site region 66312 1681 bp upstream
Tssr66313 transcription start site region 66313 1702 bp upstream
Tssr66314 transcription start site region 66314 1710 bp upstream
Tssr66315 transcription start site region 66315 1730 bp upstream
Tssr66316 transcription start site region 66316 1789 bp upstream
Tssr66317 transcription start site region 66317 1801 bp upstream
Tssr66318 transcription start site region 66318 1846 bp upstream
Tssr66319 transcription start site region 66319 1869 bp upstream
Tssr66320 transcription start site region 66320 1896 bp upstream
Tssr66321 transcription start site region 66321 1914 bp upstream
Tssr66322 transcription start site region 66322 1934 bp upstream
Tssr66323 transcription start site region 66323 1980 bp upstream
Tssr72199 transcription start site region 72199 738 bp upstream
Tssr72200 transcription start site region 72200 208 bp downstream
Tssr72201 transcription start site region 72201 709 bp downstream
Tssr72202 transcription start site region 72202 1572 bp downstream
Tssr72203 transcription start site region 72203 1958 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory