rs232596709 SNP Detail

Summary

• ID
  rs232596709
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:83464239 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGCAGGG ATGTTCAACA
  TACATAAATC AGTAAATGAG ATCCACTGTA TAAATGGACT CAATTCAAGA AAGCAGAAAG
  TAGATTCAGA AAATGCCTGT GGTGAAAACC AACAGCTCTT CATTATTAAA GCCCTGAAGA
  CAACAGAAAT ACAAGGAACG TATTTCAATA CAATAAAGGA AATATACAAC AAGCCTGTAG
  Y
  CAACGGAATG CTAACCGGAG AAAAACTGGA AGCATTTCTG CTAAAAATCA GGAAAGGGAC
  ATGGATACTT TCTCTCAGTA CTTCTTTTCA GCTGAGTACT TGAAGTTTTT GCTACAGCAG
  TAAGGCAAGA GAAGGAGACA AGATGGATTC AAACAGGAAA GGAAGAAGTC AAGCAATATT
  CATTGGCAGA TGATATCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072484	MGP_WTSI_11_83386915	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232596709					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072484	MGP_WTSI_11_83386915	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83464239 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	mRNA-UTR
Rr452988	regulatory region 452988	1987 bp distal
Rr452989	regulatory region 452989	762 bp distal
Tssr103714	transcription start site region 103714	1234 bp upstream
Tssr103715	transcription start site region 103715	1275 bp upstream
Tssr103716	transcription start site region 103716	1937 bp upstream
Tssr109677	transcription start site region 109677	260 bp downstream
Tssr109678	transcription start site region 109678	636 bp downstream
Tssr109679	transcription start site region 109679	914 bp downstream
Tssr109680	transcription start site region 109680	1176 bp downstream
Tssr109681	transcription start site region 109681	1298 bp downstream
Tssr109682	transcription start site region 109682	1567 bp downstream
Tssr109683	transcription start site region 109683	1618 bp downstream
Tssr109684	transcription start site region 109684	1644 bp downstream
Tssr109685	transcription start site region 109685	1689 bp downstream
Tssr109686	transcription start site region 109686	1752 bp downstream
Tssr109687	transcription start site region 109687	1801 bp downstream
Tssr109688	transcription start site region 109688	1848 bp downstream
Tssr109689	transcription start site region 109689	1891 bp downstream
Tssr109690	transcription start site region 109690	1904 bp downstream
Tssr109691	transcription start site region 109691	1914 bp downstream
Tssr109692	transcription start site region 109692	1945 bp downstream