rs232599598 SNP Detail

Summary

• ID
  rs232599598
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54799510 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGGAGGG TGTTGAGGCA
  GGTTCTTCAC CTCTTCTCTT CTCTCTCCCT CGTCAAGAAC TGAATGCACT ACAAGAAGAA
  CTTGGGCCAT TTGGCTTGGT CATTCTGGGC TTCCCTTCCA ACCAATTTGG CAAACAGGAG
  CCAGGCGAGA ACTCGGAGAT ACTCCCCAGT CTCAAGTGAG TTCTCATGGC TGGAGACGGC
  R
  GCCTCTATGG GGCAGAGGCT CAGGGGCTGC AGATATTGGT TGACGGTCTC CACGTCAGCC
  ACTCAGTTAC TCCCGCTCCC CCATCCTCAC CCCAGTTTGG GGTTTAATGG AATGAGGGGG
  AGGGTACAGG AAATAGGAGG CTGTGGGTAA CTGTCTGGGC AGCACATTGA AGGGTAGAGA
  TGTGGGGTGG GTATAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383428896	MGP_WTSI_11_54722186	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232599598					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383428896	MGP_WTSI_11_54722186	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54799510 () rs orientation: forward

Symbol	Name	Function Class
Gpx3	glutathione peroxidase 3	within coordinates
Rr447429	regulatory region 447429	1778 bp distal
Tssr3502	transcription start site region 3502	957 bp downstream
Tssr3503	transcription start site region 3503	1431 bp upstream
Tssr101553	transcription start site region 101553	1903 bp downstream
Tssr101554	transcription start site region 101554	1891 bp downstream
Tssr101555	transcription start site region 101555	1849 bp downstream
Tssr101556	transcription start site region 101556	1554 bp downstream
Tssr101557	transcription start site region 101557	1524 bp downstream
Tssr101558	transcription start site region 101558	1507 bp downstream
Tssr101559	transcription start site region 101559	1484 bp downstream
Tssr101560	transcription start site region 101560	1438 bp downstream
Tssr101561	transcription start site region 101561	127 bp downstream
Tssr101562	transcription start site region 101562	80 bp downstream
Tssr101563	transcription start site region 101563	68 bp downstream
Tssr101564	transcription start site region 101564	47 bp downstream
Tssr101565	transcription start site region 101565	368 bp upstream
Tssr101566	transcription start site region 101566	418 bp upstream
Tssr101567	transcription start site region 101567	779 bp upstream
Tssr101568	transcription start site region 101568	855 bp upstream
Tssr101569	transcription start site region 101569	938 bp upstream
Tssr101570	transcription start site region 101570	960 bp upstream
Tssr101571	transcription start site region 101571	1014 bp upstream
Tssr101572	transcription start site region 101572	1109 bp upstream
Tssr101573	transcription start site region 101573	1146 bp upstream
Tssr101574	transcription start site region 101574	1160 bp upstream
Tssr101575	transcription start site region 101575	1208 bp upstream
Tssr101576	transcription start site region 101576	1222 bp upstream
Tssr101577	transcription start site region 101577	1251 bp upstream
Tssr101578	transcription start site region 101578	1334 bp upstream
Tssr108006	transcription start site region 108006	1399 bp upstream
Tssr108007	transcription start site region 108007	110 bp upstream
Tssr108008	transcription start site region 108008	49 bp upstream
Tssr108009	transcription start site region 108009	33 bp upstream
Tssr108010	transcription start site region 108010	377 bp downstream
Tssr108011	transcription start site region 108011	973 bp downstream
Tssr108012	transcription start site region 108012	1007 bp downstream
Tssr108013	transcription start site region 108013	1101 bp downstream
Tssr108014	transcription start site region 108014	1108 bp downstream
Tssr108015	transcription start site region 108015	1191 bp downstream
Tssr108016	transcription start site region 108016	1243 bp downstream
Tssr108017	transcription start site region 108017	1294 bp downstream
Tssr108018	transcription start site region 108018	1309 bp downstream
Tssr108019	transcription start site region 108019	1345 bp downstream
Tssr108020	transcription start site region 108020	1401 bp downstream
Tssr108021	transcription start site region 108021	1421 bp downstream
Tssr108022	transcription start site region 108022	1432 bp downstream
Tssr108023	transcription start site region 108023	1685 bp downstream