rs232608954 SNP Detail

Summary

• ID
  rs232608954
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22713205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAGGTGCC ATGCATTGGA
  TCAGCGGAGC AGGGCGTTTG CTCACCTCTC CCTTCTGTCC GGCTCCACAG CGGCCCTTCG
  GAGTGGTGTA TGAGATGGAA GTTGACACAC TGGAGACCAC TTGCCATGCT TTGGACCCCA
  CCCCGCTGGC AAACTGTTCT GTGAGGCAGC TGACTGAGCA CGTGAGTGCT GCCTTGTGGT
  T
  GGTTGGTGGG TGGGTGGGTG GGTGGGAGCT GCCCAGCCAC CACAGTTCAG CAAAGTGCAG
  GTTTGGCTTT CTCCATCTCC CAGCAGCCAT CTTGGCTAGC CAGAGAGCAA AGTCTAAAAC
  CCGCTGTGGG ATAGATGGTG CCTTCCCCGA GGTTGATTTT CACAACACTT GGGCTTTTCT
  TCTTGAAGCC CTCGGGAGAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628341	MGP_WTSI_16_22894528	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232608954					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628341	MGP_WTSI_16_22894528	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22713205 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	69 bp upstream
Tssr4818	transcription start site region 4818	1631 bp downstream
Tssr4819	transcription start site region 4819	876 bp upstream
Tssr4820	transcription start site region 4820	1492 bp upstream
Tssr137558	transcription start site region 137558	1874 bp downstream
Tssr137559	transcription start site region 137559	1678 bp downstream
Tssr137560	transcription start site region 137560	1635 bp downstream
Tssr137561	transcription start site region 137561	1610 bp downstream
Tssr137562	transcription start site region 137562	1284 bp downstream
Tssr137563	transcription start site region 137563	214 bp downstream
Tssr137564	transcription start site region 137564	184 bp downstream
Tssr137565	transcription start site region 137565	47 bp downstream
Tssr137566	transcription start site region 137566	38 bp downstream
Tssr137567	transcription start site region 137567	322 bp upstream
Tssr137568	transcription start site region 137568	341 bp upstream
Tssr137569	transcription start site region 137569	372 bp upstream
Tssr137570	transcription start site region 137570	387 bp upstream
Tssr137571	transcription start site region 137571	721 bp upstream
Tssr137572	transcription start site region 137572	744 bp upstream
Tssr137573	transcription start site region 137573	838 bp upstream
Tssr137574	transcription start site region 137574	859 bp upstream
Tssr137575	transcription start site region 137575	865 bp upstream
Tssr137576	transcription start site region 137576	1545 bp upstream
Tssr137577	transcription start site region 137577	1967 bp upstream
Tssr140504	transcription start site region 140504	63 bp upstream
Tssr140505	transcription start site region 140505	14 bp upstream
Tssr140506	transcription start site region 140506	375 bp downstream
Tssr140507	transcription start site region 140507	758 bp downstream
Tssr140508	transcription start site region 140508	802 bp downstream
Tssr140509	transcription start site region 140509	821 bp downstream
Tssr140510	transcription start site region 140510	836 bp downstream
Tssr140511	transcription start site region 140511	879 bp downstream