rs232623277 SNP Detail

Summary

• ID
  rs232623277
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117114314 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTTAAATGG ATAAAATCTC
  TCTCCTGTGT TACACACACA CTCAGACCTT GTGAGTGTGA CACTAATGCA GATTAGGTTC
  TTGGCCAAGA GCTGGTGTGA CACACAGGCT ATACCTGCAC CCAGAAGCTG CCTCTGACTC
  TGGAGCTGAG TCTACCTGGC AGTTTGATGC TCTGCCTCCT CAGCAGAGCA CAGGATGCTC
  M
  AGAGGGATGC TGCATCCTGT GAATGTACAG TCCACTGATG CTACAGCTAG TCTACAGGCC
  TGAGAAGGAA GAAGGTATAT GGGGGACTCT CACAGGCTGG AGAAATTCCC TAAAGATGAT
  GCTGTAGGTT AAGCCCCCAG CTGCACCTGC CCTTCTCAGA ATGACACTTA GGCCTTAGCC
  ACACTGCTTA TATCAACAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323495159	CHEV_10_116715465	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232623277					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117114314 () rs orientation: forward

Symbol	Name	Function Class
Gm67237	predicted gene, 67237	within coordinates
Lyz2	lysozyme 2	within coordinates
Tssr95904	transcription start site region 95904	1069 bp downstream
Tssr95905	transcription start site region 95905	1001 bp downstream
Tssr95906	transcription start site region 95906	947 bp downstream
Tssr95907	transcription start site region 95907	914 bp downstream
Tssr95908	transcription start site region 95908	733 bp downstream
Tssr95909	transcription start site region 95909	643 bp downstream
Tssr95910	transcription start site region 95910	497 bp downstream
Tssr95911	transcription start site region 95911	389 bp downstream
Tssr95912	transcription start site region 95912	318 bp downstream
Tssr95913	transcription start site region 95913	241 bp downstream
Tssr99410	transcription start site region 99410	957 bp upstream
Tssr99411	transcription start site region 99411	879 bp upstream
Tssr99412	transcription start site region 99412	773 bp upstream
Tssr99413	transcription start site region 99413	720 bp upstream
Tssr99414	transcription start site region 99414	606 bp upstream
Tssr99415	transcription start site region 99415	546 bp upstream
Tssr99416	transcription start site region 99416	479 bp upstream
Tssr99417	transcription start site region 99417	404 bp upstream
Tssr99418	transcription start site region 99418	385 bp upstream
Tssr99419	transcription start site region 99419	347 bp upstream
Tssr99420	transcription start site region 99420	289 bp upstream
Tssr99421	transcription start site region 99421	213 bp upstream
Tssr99422	transcription start site region 99422	496 bp downstream