rs232626878 SNP Detail

Summary

• ID
  rs232626878
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9883114 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCACGCGA AGACCCGGAG
  GGAAAGAAGC CAAGCTCCGC AGCACACCTC CGACAGCCAG GCTCGCAGGA GCCCAGGACT
  GACTAAGCAA TTAAAACTTG GGGACAAGTC CTCCCTGGAG GACACCGGCC CCAGGATCTT
  TCCAACCACT ACAAATCCTC CAAAAGGAGA AAGCTGAGCT TTTAGTTTAC AAAAAACCAA
  M
  CAAACAAACC CCCAAACACA CACACACAAA CAGTCCCTCC AAGAGGAGGG AGTGATATCA
  AACTTAAAAA AAAAAAAAAA GTCACAAGTC ACAATACCAA CCTGAGTAGC AAGGAGCGTA
  GAGGAGGAGG AGGAGGCGTG TGACCTGCCC GGTCAGATTG CGTAGCTCTC TATGTCTCGC
  TCTCTCAGTC TCTCTCTCTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353056030	MGP_WTSI_2_9799930	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232626878					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353056030	MGP_WTSI_2_9799930	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9883114 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11183	CpG island 11183			585 bp distal
Cpgi11184	CpG island 11184			within coordinates
Gata3	GATA binding protein 3			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Gm13256	predicted gene 13256			within coordinates
Rr551592	regulatory region 551592			1037 bp distal
Rr551593	regulatory region 551593			287 bp proximal
Rr551594	regulatory region 551594			1456 bp proximal
Rr551595	regulatory region 551595			1788 bp proximal
Tssr16062	transcription start site region 16062			1444 bp upstream
Tssr22554	transcription start site region 22554			844 bp upstream
Tssr22555	transcription start site region 22555			453 bp upstream
Tssr22556	transcription start site region 22556			416 bp upstream
Tssr22557	transcription start site region 22557			287 bp upstream
Tssr22558	transcription start site region 22558			109 bp upstream
Tssr22559	transcription start site region 22559			57 bp downstream
Tssr22560	transcription start site region 22560			135 bp downstream
Tssr22561	transcription start site region 22561			164 bp downstream
Tssr22562	transcription start site region 22562			277 bp downstream
Tssr22563	transcription start site region 22563			1234 bp downstream
Tssr22564	transcription start site region 22564			1260 bp downstream
Tssr22565	transcription start site region 22565			1286 bp downstream