rs232636065 SNP Detail

Summary

• ID
  rs232636065
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:116386903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGAGCCAA AGGCCAGCCA
  GGGTGACCCT CAGACCCTCT CTCAGAATAG AGTACAGGAG AAAATACGCC AGGAACAACA
  AGGCATGGCT TTAACAATTT AGAATGGGTC ATATTCACTA GCTTTGCAAC TTTTCTAAAT
  GCTAGTTACA GTCTTTTATG TTTTATGCAT TTAATTATAG GCACTGGGAG AAAAGCAAGG
  R
  AAACAATGTT GGCAGGTCTG CCCCACAGAT CCTATCAACC TGGATGCAAC AGGATGGCCC
  AATTATTAAA TCCAGAGGCC AGTGGTTAGG TGTGATTCTC AGCTCTTTCT ATTAGCTGCT
  AACTCTATAA TCCTGACTGC TTCATGTAAA TAATAGTATA GACTTTCTAT ATTAAGTATA
  GACTTACTAT ATTATTAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320895786	CHEV_3_116296172	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232636065					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116386903 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13737	CpG island 13737	1222 bp proximal
Rr397965	regulatory region 397965	1509 bp upstream
Rr583746	regulatory region 583746	1196 bp proximal
Rr583747	regulatory region 583747	1493 bp proximal
Rr583748	regulatory region 583748	1574 bp proximal
Rr583749	regulatory region 583749	1767 bp proximal
Rr583750	regulatory region 583750	1935 bp proximal
Sass6	SAS-6 centriolar assembly protein	1728 bp upstream
Trmt13	tRNA methyltransferase 13	within coordinates
Tssr31360	transcription start site region 31360	1705 bp upstream
Tssr35316	transcription start site region 35316	1562 bp downstream
Tssr35317	transcription start site region 35317	1594 bp downstream