rs232649578 SNP Detail

Summary

• ID
  rs232649578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77441723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGCCTTT TCTAGACATG
  AGCCCTCCTG TGACATTCAA ATTAAAGGCC AGAGGCCTGT TCCAGGAGTG TGTGGTCCAT
  AAACCATGCC TGGTAACCTC CTTATTCGTC TTCCGGACCA CCTGAAAGGG TTAGCCTGAG
  TTTCTTTGCC CTCTCTTACC CAAATGCAGC CTGCATATAA GAAAAAGTCC CCAAATGTGG
  R
  TGGTGAAGAG GCTACTGGTT GGGCCAAAAC GTTCCTCTGG GTCCTGACCT AGCACACAGC
  GCCCCCACTC CTCCCGTGCC TCCCTGCGTG GACGCGCAGT CTTGCACCCA CATCCGGGGT
  CTCTGGGCCT AGGACCTTGA GTCGCGCGTC CCCGGGGCTC TGCGCGCACC CGGGCGCCTG
  ACCCGCCCCG TGACGCATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss380971340	MGP_WTSI_10_77068634	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs232649578					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380971340	MGP_WTSI_10_77068634	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77441723 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1760	CpG island 1760	within coordinates
D10Jhu54	DNA segment, Chr 10, Johns Hopkins University 54	1120 bp distal
Gm49325	predicted gene, 49325	308 bp upstream
Rr384959	regulatory region 384959	1951 bp downstream
Rr402005	regulatory region 402005	527 bp upstream
Rr434545	regulatory region 434545	1626 bp distal
Rr434546	regulatory region 434546	within coordinates
Rr434547	regulatory region 434547	693 bp proximal
Sumo3	small ubiquitin-like modifier 3	208 bp upstream
Tssr94265	transcription start site region 94265	155 bp upstream
Tssr94266	transcription start site region 94266	328 bp upstream
Tssr94267	transcription start site region 94267	355 bp upstream
Tssr94268	transcription start site region 94268	689 bp upstream
Tssr94269	transcription start site region 94269	772 bp upstream
Tssr94270	transcription start site region 94270	806 bp upstream
Tssr98239	transcription start site region 98239	1224 bp downstream