rs232654230 SNP Detail

Summary

• ID
  rs232654230
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58891289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGCCACA GCCCTCCTGG
  GAACCAGAAC CCAGCTCAGA GTGACAGGAA GAGGCTGGTT TCCCTCTACA ACTGTCCTGG
  GATGATCCCT CTTGCTTCCC AGGCCTCGAG TCACCACTCA TAGGTGGAAA GGGGACAGAC
  TCCTGCAAGA ACCCCTCTTT GTGCCCCCTG TCCTTGGCAG TGGTTTCATG AGTCAACCCC
  R
  TGGAGGGTGG GAACAGGAGT TGTTCCTTGC ATGCCTCAGG AGAGGGGCCA GTCGTGACTG
  GTGGGTTGTC CAGGGAGTGG CTTCGGCCTG GGACCTCTCT GACACTGGAA CTAGGTAGTC
  GCAGGGCAGT CTCAAAGGAG GGTGTCTTGG TCATCAGAGA GGCCTGCTCT TCCCTAGCCG
  CCTCTTCCTC CAACAAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383534420	MGP_WTSI_11_58813965	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232654230					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383534420	MGP_WTSI_11_58813965	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58891289 () rs orientation: forward

Symbol	Name	Function Class
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Rr448071	regulatory region 448071	1957 bp proximal
Tssr101781	transcription start site region 101781	1093 bp downstream
Tssr108186	transcription start site region 108186	1226 bp upstream
Tssr108187	transcription start site region 108187	1182 bp upstream
Tssr108188	transcription start site region 108188	1056 bp upstream
Tssr108189	transcription start site region 108189	1719 bp downstream
Tssr108190	transcription start site region 108190	1735 bp downstream
Tssr108191	transcription start site region 108191	1892 bp downstream
Tssr108192	transcription start site region 108192	1911 bp downstream
Tssr108193	transcription start site region 108193	1928 bp downstream
Tssr108194	transcription start site region 108194	1958 bp downstream