rs232666585 SNP Detail

Summary

• ID
  rs232666585
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr14:75413806 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGATTCAC TACTCTTCTT
  TACAGGAAAT GTTTAAATAA TTGAACTCTC TAATTGGGTT AAAGAGATCC TGAACACGTG
  GGTGTTCTAT AAGTAAAGGA ATGAGTAAAT AATATAGTAA CCTTTCTCTA TGGGCCCTGT
  GCTTAGAGAG ATCGTTTTGT TTCGTTTATA CAGATATGAT CATCATTGAG AGAGTGGGAG
  R
  GGGATTGGTT TCAAATGGGG TGAGAGAGAG AGGGAGGTGG GATAGGCATG TTCGCCCATG
  AAAATCCCTT ACAGTTTGTA CATCACACCT CTTCCTTTGT TGTTTCACTG GAGATGAAGA
  ATTTGTTTTT TCCCAGATGA AAGTATGTAG GCTCCTGGGT TTTGCTTTAA GCAACTAGAG
  TCAGACAAAA GAGTTCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391577250	MGP_WTSI_14_75576173	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232666585					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391577250	MGP_WTSI_14_75576173	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75413806 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lcp1	lymphocyte cytosolic protein 1			Intron
				Noncoding-Transcript-Variant
Rr369874	regulatory region 369874			1644 bp upstream
Rr404213	regulatory region 404213			316 bp upstream
Rr495436	regulatory region 495436			961 bp distal
Tssr4478	transcription start site region 4478			1414 bp downstream
Tssr126621	transcription start site region 126621			1388 bp downstream
Tssr126622	transcription start site region 126622			1358 bp downstream
Tssr126623	transcription start site region 126623			223 bp upstream
Tssr126624	transcription start site region 126624			267 bp upstream
Tssr126625	transcription start site region 126625			426 bp upstream
Tssr126626	transcription start site region 126626			441 bp upstream
Tssr126627	transcription start site region 126627			457 bp upstream
Tssr126628	transcription start site region 126628			768 bp upstream
Tssr126629	transcription start site region 126629			1443 bp upstream
Tssr126630	transcription start site region 126630			1482 bp upstream
Tssr129768	transcription start site region 129768			1559 bp upstream
Tssr129769	transcription start site region 129769			214 bp downstream
Tssr129770	transcription start site region 129770			283 bp downstream