rs232674915 SNP Detail

Summary

• ID
  rs232674915
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115150980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCGAAGAA AGAAGAAGGG
  CTGATGGTCT CGGAGACCAC AGAGTGAAAA CACCTGGTGT CCCCAGCCGA AGCCCATCAG
  AGGGGAAAAC CAGCACGCAG ACCGGGGGAC TCCCCGACCT GCGCAGCCTC CACCGGCAAC
  TGGGGACTTT TCCGGGTCCT CTCCCTCCCC ACTGTGGGTC TTGACATCTA CCGTGTGCTG
  R
  GGCCCGCGGG TCCCCAAAGC GATTGCAAAA GGCAATGGGA AGGCAGGGAA GGGGGTTTGA
  CAGGCCAGAG GCAGAGGAGC GGGCGCGGGT CCCCAGCCCG GCTCCCCGGG GTCTGCACCT
  GCAGGGTGGT GATGTGCTTG TCGTTGAACT TGTTCTCGCA GTAGCGCAGC ACCAGCGACG
  TCTTCCCCAC GCAGCCTTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484104	CHEV_10_114752131	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232674915					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115150980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2204	CpG island 2204	within coordinates
Gm10752	predicted gene 10752	571 bp upstream
Gm67120	predicted gene, 67120	554 bp upstream
Rab21	RAB21, member RAS oncogene family	within coordinates
Rr402237	regulatory region 402237	389 bp upstream
Rr402238	regulatory region 402238	1085 bp upstream
Rr439192	regulatory region 439192	1801 bp distal
Rr439193	regulatory region 439193	493 bp proximal
Rr439194	regulatory region 439194	506 bp proximal
Rr439195	regulatory region 439195	565 bp proximal
Rr439196	regulatory region 439196	731 bp proximal
Tssr95806	transcription start site region 95806	21 bp downstream
Tssr95807	transcription start site region 95807	8 bp upstream
Tssr95808	transcription start site region 95808	565 bp upstream
Tssr95809	transcription start site region 95809	597 bp upstream
Tssr99318	transcription start site region 99318	188 bp upstream
Tssr99319	transcription start site region 99319	145 bp upstream
Tssr99320	transcription start site region 99320	432 bp downstream
Tssr99321	transcription start site region 99321	471 bp downstream
Tssr99322	transcription start site region 99322	542 bp downstream