rs232697689 SNP Detail

Summary

• ID
  rs232697689
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:25276026 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTATTTTT AAAGATGGAC
  CTGTAACATG TGACTTTGTT GTGTAAAATC ATTCAATGAT GCAGTCTTGT ATCAGACTTT
  ATTTTCTTAT TCGTATCCAT AGTAATTTTT GCTTCACCTG TCAGTAACAC TCTGTGGCTG
  AAAGTCAGCG TCCCCACATT CTTGATACGG CCGCTCTATC AGTGTCTCTG CCCTTTGTGC
  R
  TTGTGCTTGG ACTTTAATAT GAGTATTCCA CTCGCTGGGA AGTCTGAAGA GCCATTGTGT
  AGCTGAGTGA CATTGTGTCC GTTCTGTGTA TTGTGCTTGA GAATAAAGTG GCGCGTTATC
  TCTGGAGGGC CTTCCCTGAC TGCAGCTCAG ATGCTGCTGC TGAAGAGGGA TCCTAGGAAT
  GCGCCTTCCA AGTAAGTCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402111561	MGP_WTSI_19_25373152	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	G	G	A	A	G	G	A	A	G	G	G	G	G	G	G	A	A	A	A	A	G	A	A	A	A	A	G	A	A	G	G	G	G	G	A	A	G	G	G	G	A	A	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232697689					SNP	G	G	G	A	G	G	A	A	G	G	A	A	G	G	G	G	G	G	G	A	A	A	A	A	G	A	A	A	A	A	G	A	A	G	G	G	G	G	A	A	G	G	G	G	A	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402111561	MGP_WTSI_19_25373152	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:25276026 () rs orientation: forward

Symbol	Name	Function Class
Kank1	KN motif and ankyrin repeat domains 1	within coordinates
Rr364351	regulatory region 364351	1827 bp distal
Rr364352	regulatory region 364352	1036 bp distal
Rr364353	regulatory region 364353	1776 bp proximal
Tssr155675	transcription start site region 155675	1908 bp upstream
Tssr155676	transcription start site region 155676	1924 bp upstream