rs232708783 SNP Detail

Summary

• ID
  rs232708783
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:4298883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTGGTGC TCTCTCTCCT
  CTGTTTGGGG ACTTAGAGAT CTGTTGAACA GAAATTCCCA GTCCTGTTGC CTGTCTGTAC
  TGAGCCTCTG CCCTCTGGAG GGATACGGGT GGGCACCCTC CTGACTGCAA CAGATGCCAG
  TAACCTACTT CTCCTTAGTG GCCAGTAGCT CATACTGGAT CTTTTAGACT CTAAGGCTTT
  W
  GCAACCTGGG CAAAGCAGAG AATCCTGACT TCATCTCTGC TGACCACCAC CACAGGAGGG
  CATTAACTCC GTGTGTCCCC CACATCCCCT TGCCTACTCT GCAAATGGCA CAAAAGGTCA
  GAAAATGAAA GAGCACAGCT TTGTGCTGGC TTCAGCTTCT ACTAGGCCCT GATGCCACTA
  AGCGGTACAT GGTTGTAACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373521562	MGP_WTSI_8_4248883	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232708783					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373521562	MGP_WTSI_8_4248883	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:4298883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20049	CpG island 20049	384 bp proximal
Cpgi20050	CpG island 20050	1457 bp proximal
Gm49320	predicted gene, 49320	within coordinates
Gm63796	predicted gene, 63796	524 bp upstream
Map2k7	mitogen-activated protein kinase kinase 7	986 bp downstream
Rr658999	regulatory region 658999	1892 bp proximal
Tgfbr3l	transforming growth factor, beta receptor III-like	within coordinates
Tssr76110	transcription start site region 76110	664 bp downstream
Tssr76111	transcription start site region 76111	642 bp downstream
Tssr76112	transcription start site region 76112	616 bp downstream
Tssr76113	transcription start site region 76113	574 bp upstream
Tssr76114	transcription start site region 76114	1424 bp upstream
Tssr76115	transcription start site region 76115	1550 bp upstream