rs232713864 SNP Detail

Summary

• ID
  rs232713864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:67062904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTTTATT CCAATAGGTT
  GAACCTGACA AAAAGCTATT GAATATCCTG GCAATCTCAG ATAGAAAGAT ATTTGCTATT
  ATTGAGAAAA ATATACTAAG AATTTAGGGA TAGACCAAAA AGAGTACAGG AAATCTTTTC
  AACGTCACAC AGGGCTTTGC TGAATAGGAC CTCTCAGAAG GTGTGTGTGT GTGTGTGTGT
  R
  TGTATGTATG TATGTATGTT TGATATGTGT GAGAGGGAAG GGTTTTCACA TGCTGTATAG
  TTCATGTGGA AGTCAGAGGA CGTTTTGCAT TGATTCTTCC CTCTCCACCT AATTTAGGTG
  GGGTCTCCTC ATTGTGTAAG CCCGGCTCAC CAGCAAATAT CTGGAGGTCT TCCTGTCGCT
  GCCTCCCCTC TCTGAATAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	RIIIS/J	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss377898692	MGP_WTSI_9_67003429	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	KK/HlJ	LP/J	MA/MyJ	NZB/BlNJ	RIIIS/J	SJL/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs232713864					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377898692	MGP_WTSI_9_67003429	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:67062904 () rs orientation: forward

Symbol	Name	Function Class
D9Dcr5	DNA segment, Chr 9, Derry C. Roopenian 5	within coordinates
D9Mit302	DNA Segment, Chr 9, Massachusetts Institute of Technology 302	within coordinates
D9Mit302.1	DNA segment, Chr 9, Massachusetts Institute of Technology 302.1	130 bp distal
Gm19299	predicted gene, 19299	within coordinates
Gm40529	predicted gene, 40529	763 bp downstream
Gm68695	predicted gene, 68695	359 bp upstream
Rr681887	regulatory region 681887	1932 bp distal
Rr681888	regulatory region 681888	1497 bp distal
Rr681889	regulatory region 681889	991 bp proximal
Rr681890	regulatory region 681890	1432 bp proximal
Tssr90326	transcription start site region 90326	391 bp upstream
Tssr90327	transcription start site region 90327	358 bp upstream