rs232714094 SNP Detail

Summary

• ID
  rs232714094
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84570708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATAAATA TTTCACACCG
  TTAGATGAAC TTCCAGATGA CAACTAAGAA GCCAAGAGCC CAGAACACAC CTTAACTCTC
  TAAGGGGTTG GGGGGACGGG GAGGACGGAC TTGAAGCCAG AAGAGGCTAA GCCTGATGAT
  AAAATCTGGG ACCTGACTTG CAACTTGAGT GATGCCTTTG TCCCCCGCCC CCTCCGCCCC
  T
  CCCCACCCCC CCTTTCTAGA GGCAGGGGCT GAGCTCATGC CCCTATACTT TAAGAGCGCT
  TCGCCAGCGG TTTTGTCCGC TAGATAGAAA TTTTCCAAAA AATATCTCCC ACGCTAGGCA
  AAACACTGAA AAGGAAGTTT TTTTGCGCCA AGAGGAGAGA CATGGCGAGA CAGACCGAGC
  CACTACCGCT CCCAACACAC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SWR/J	WSB/EiJ
ss397140838	MGP_WTSI_16_84774065	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SWR/J	WSB/EiJ
rs232714094					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397140838	MGP_WTSI_16_84774065	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84570708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8384	CpG island 8384	106 bp proximal
Jam2	junction adhesion molecule 2	303 bp upstream
Tssr139177	transcription start site region 139177	812 bp downstream
Tssr139178	transcription start site region 139178	165 bp downstream
Tssr139179	transcription start site region 139179	35 bp upstream
Tssr139180	transcription start site region 139180	70 bp upstream
Tssr139181	transcription start site region 139181	266 bp upstream
Tssr139182	transcription start site region 139182	316 bp upstream
Tssr139183	transcription start site region 139183	343 bp upstream
Tssr139184	transcription start site region 139184	355 bp upstream
Tssr139185	transcription start site region 139185	409 bp upstream
Tssr139186	transcription start site region 139186	443 bp upstream
Tssr139187	transcription start site region 139187	481 bp upstream
Tssr139188	transcription start site region 139188	501 bp upstream
Tssr139189	transcription start site region 139189	541 bp upstream
Tssr139190	transcription start site region 139190	608 bp upstream
Tssr141866	transcription start site region 141866	1206 bp upstream