rs232714455 SNP Detail

Summary

• ID
  rs232714455
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:90919440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCTCTTTT AACAATGTTC
  TGGTAGCATG CTCCTGTCGC TGCCCTCTAA AGTCTGGGAA CATGTCACCC AGGACTCGGC
  CCACACTTTA TTAAGCATCT ACTACTGCAC GTCACAAGTT TGCACATACC TAAAAACCAC
  TACTTCCCGT CCACTCTGTA GCTTTGCGGA TGAGTTTGCT CCACCCTCCA CCAAAAATCG
  Y
  ACTCTTAAAA TGTCTGCAGC CTAATAAAAA AAAGTTCGTT GTTGCTGAGC GATAAATGCT
  AATGAGACTT TCTCCTATTT AGAGCTGTGT GCCTACATTA AAACTATAGT CCTTTTTTAA
  AGATTTATTC TTGTTTATGT GTATGAGTGT CAGTGTATTT GTGCACGTGT GTGCAGGTGC
  GCGAGGATCC CGCAAGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381243013	MGP_WTSI_10_90546323	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232714455					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381243013	MGP_WTSI_10_90546323	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:90919440 () rs orientation: forward

Symbol	Name	Function Class
Apaf1	apoptotic peptidase activating factor 1	808 bp upstream
Cpgi2099	CpG island 2099	42 bp distal
Ikbip	IKBKB interacting protein	within coordinates
Rr402144	regulatory region 402144	424 bp downstream
Rr436976	regulatory region 436976	1160 bp distal
Rr436977	regulatory region 436977	511 bp distal
Tssr95222	transcription start site region 95222	1475 bp downstream
Tssr95223	transcription start site region 95223	550 bp downstream
Tssr95224	transcription start site region 95224	503 bp downstream
Tssr95225	transcription start site region 95225	475 bp downstream
Tssr98900	transcription start site region 98900	1001 bp upstream
Tssr98901	transcription start site region 98901	917 bp upstream
Tssr98902	transcription start site region 98902	878 bp upstream
Tssr98903	transcription start site region 98903	805 bp upstream
Tssr98904	transcription start site region 98904	771 bp upstream