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rs232717145 SNP Detail
Summary
  • ID
    rs232717145
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr15:82223638 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCGAACTCAG AAATCCACCT
    GAAACCTTGC TCTTAACCAC TCGAAAACGG TAGTGAAAGA GGCTGGGTGG GGTTTCAGCT
    CTCGAAAGGT CAGGAGGCTG CCCCCTCCAC CTGACACCCA AGGGGTTGTT CGCCCACCCA
    CTCCCCAAAT GTATTTATTC ATTACTTATT CATATGTTAA ACACAGGCTA GGTGCCAACC
    W
    CTATTTCTGG ATGCCTTTAC ACCGATGATG ATCATAGCTG TCCCCTCTCC GAATCTGTGC
    CATTTTCCTC CTATCAGGTA ATGGCAAACC GACTTCTCTG CCAATCTTTT CTCTCAGCCT
    TTACATGCAA TTGTCCAAAA ATTGATTCCT GCCTTTAAAT TCCACCTCTC ATCCCACCCA
    GTAACGCTGG CCTCATTACA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss394739006 MGP_WTSI_15_82169867 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232717145 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A T A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss394739006 MGP_WTSI_15_82169867 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:82223638 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi7419 CpG island 7419 106 bp distal
Cpgi7420 CpG island 7420 1304 bp proximal
Naga N-acetyl galactosaminidase, alpha 655 bp upstream
Pheta2 PH domain containing endocytic trafficking adaptor 2 within coordinates
Rr506479 regulatory region 506479 468 bp distal
Rr506480 regulatory region 506480 70 bp distal
Rr506481 regulatory region 506481 312 bp distal
Rr506482 regulatory region 506482 931 bp proximal
Rr506483 regulatory region 506483 1753 bp proximal
Tssr4669 transcription start site region 4669 562 bp upstream
Tssr132381 transcription start site region 132381 1762 bp upstream
Tssr135543 transcription start site region 135543 646 bp upstream
Tssr135544 transcription start site region 135544 583 bp upstream
Tssr135545 transcription start site region 135545 573 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory