rs232718339 SNP Detail

Summary

• ID
  rs232718339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:31954665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTCTTCC TCTGAGAAGG
  TGGGGGTGGG GAGGCAGGAA AGACCCTGGG ACCATGTACA GCTGTGGGAT GGGGAACTTT
  CCTATAGCTG CTTGCATAAT ACTTCAGTAG GCTCTGGTTT TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTCTA TACAGAGGCC AGCAGTCAAC CTCAGGTGTG
  R
  TTCCTTAAGA GACATCCACC CTGATTTTTT TTTCCTTACC TGGGTCATAG CTCCTGCGTG
  GCAAGCACAT TACCAACAGT CTCTCTGAAG TCCTTCAGTG GACAGTTTAG GGGTAGTGTG
  TGCGCTGTGG CCTGTTGCTG CTTCCAGTAT CCGGACCTCA ACCAGCTGGG AGCCAGTGTT
  TGTGGAGGAC CCAGAGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353550484	MGP_WTSI_2_31920173	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232718339					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353550484	MGP_WTSI_2_31920173	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:31954665 () rs orientation: forward

Symbol	Name	Function Class
Fam78a	family with sequence similarity 78, member A	within coordinates
Gm16534	predicted gene 16534	within coordinates
Rr367161	regulatory region 367161	1310 bp downstream
Rr367162	regulatory region 367162	315 bp upstream
Rr554785	regulatory region 554785	500 bp distal
Rr554786	regulatory region 554786	56 bp distal
Rr554787	regulatory region 554787	114 bp proximal
Rr554788	regulatory region 554788	1389 bp proximal
Tssr17240	transcription start site region 17240	1308 bp downstream
Tssr23448	transcription start site region 23448	1394 bp upstream
Tssr23449	transcription start site region 23449	411 bp downstream
Tssr23450	transcription start site region 23450	436 bp downstream
Tssr23451	transcription start site region 23451	703 bp downstream
Tssr23452	transcription start site region 23452	760 bp downstream
Tssr23453	transcription start site region 23453	785 bp downstream