rs232734744 SNP Detail

Summary

• ID
  rs232734744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35251781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTGACTCAC CTGCCCTCCG CCCGCCCGTC
  CCCGCCGCAG GCTGTTCCCT GAGTCTCCTC CCCTCCTTCC CCTCGTGGGT TCGGGTCTGC
  GTGCCCGGAG GCCAAACCAA AAGGACTTCT GGGGGTCCCG GCCTGGAGTT GCCAGGCTAC
  Y
  TTCCGGGTGG GAGGCTCTCC CTAGAAAGCG CCGGCTGCGC CAGGCCGGGA CCGGCGGTAT
  ggaggccgcg ggaggcgccg ggaagagcgc gcggagggag gtgccgggaa gggcgggcgc
  ggcgcggggc gggccggggg cgggggcgca                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325583040	CHEV_18_35278382	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232734744					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35251781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9834	CpG island 9834	within coordinates
Ctnna1	catenin alpha 1	174 bp upstream
Gm46617	predicted gene, 46617	within coordinates
Tssr150509	transcription start site region 150509	152 bp upstream
Tssr150510	transcription start site region 150510	179 bp upstream
Tssr150511	transcription start site region 150511	214 bp upstream
Tssr150512	transcription start site region 150512	693 bp upstream
Tssr150513	transcription start site region 150513	1078 bp upstream
Tssr150514	transcription start site region 150514	1101 bp upstream
Tssr150515	transcription start site region 150515	1504 bp upstream
Tssr152859	transcription start site region 152859	71 bp downstream