rs232739175 SNP Detail

Summary

• ID
  rs232739175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:60937890 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAACCCA TTTCTGAGGA
  CAGTAGAAGT GACTCCTCAT TGTCTTCCTT AACTGCTAGA AGACGTGTAT GAGCCCAGGC
  AAGCAGGGCC TCACCAGACC GGAGTCCACA CCTGACACGG GATGAGCCTT TCTGTATGTG
  TGTAGGGGAA GAGAGCTGCC TGCCATCCCA AAAGCTGCTC ACAGAGATGG AGTTCCTGGT
  Y
  CATGTGTTAC ATGGTTGCCA CAGCCATCCA GATAGCCCTG GGCTCCTCTC CCGGTCCCTA
  AATGACCTCA GCCTTACACT CCCAACCCCC CCCCCCAAAA AAAAACCAAA CAGGGTTAGA
  ATTTGCTTGC CTTCTTGCCT TGTTCCCCCA ACCCCCAAGC TGCCTATTTG CTTGCCTATG
  GGGAACTAAA ACCAGATGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400867834	MGP_WTSI_18_60964472	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232739175					SNP	C	C	C	T	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400867834	MGP_WTSI_18_60964472	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:60937890 () rs orientation: forward

Symbol	Name	Function Class
Cd74	CD74 antigen (invariant polypeptide of major histocompatibility complex, class II antigen-associated)	Intron
D18Mit77	DNA segment, Chr 18, Massachusetts Institute of Technology 77	577 bp distal
Rr405669	regulatory region 405669	970 bp downstream
Rr405670	regulatory region 405670	40 bp upstream
Rr405671	regulatory region 405671	838 bp upstream
Rr405672	regulatory region 405672	1694 bp upstream
Rr538682	regulatory region 538682	960 bp distal
Tssr151326	transcription start site region 151326	962 bp downstream
Tssr151327	transcription start site region 151327	950 bp downstream
Tssr151328	transcription start site region 151328	188 bp upstream
Tssr151329	transcription start site region 151329	260 bp upstream
Tssr151330	transcription start site region 151330	1124 bp upstream
Tssr151331	transcription start site region 151331	1160 bp upstream
Tssr153492	transcription start site region 153492	804 bp upstream