rs232739278 SNP Detail

Summary

• ID
  rs232739278
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3307413 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTAATGAA TGCTGTTGCA
  TAAGGATAAG TGCTCGAAGA ATTTAGTCAA CATTTAAAAT ATTCTGACTG TGGTAACCTG
  GGCATGTTCA GAGAAAAGCT CATCTGTGAT GTTACTGGTC AGGGAACTGA AACTAGATAA
  CTATTTAATT TGTCCCTTGA TTCAGGACAA CCAGCTTTGC TAAAGAGCTA GCCTCTTTTT
  M
  TTCTGTTAGT TGAAGTATTA CACTCCTCTG AAAAAGGAAT GTATACCACT AATTACTTGA
  TATCTCCTCA TAACCACGAA AATATTTACT TCTTGTTATG AGAAAGAAGT ACATTTAAAT
  ATTTCTATAA AAATTTAATT TTTATTGACT AAAATTTTTT CTTTTGCACT TAAAATATCT
  TTAAACAGTA TTTCCCAAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392857619	MGP_WTSI_15_3227931	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232739278					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	A	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	A	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392857619	MGP_WTSI_15_3227931	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3307413 () rs orientation: forward

Symbol	Name	Function Class
Rr498565	regulatory region 498565	320 bp distal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	1326 bp upstream
Tssr130395	transcription start site region 130395	736 bp downstream
Tssr130396	transcription start site region 130396	699 bp downstream
Tssr130397	transcription start site region 130397	1190 bp upstream
Tssr130398	transcription start site region 130398	1226 bp upstream
Tssr130399	transcription start site region 130399	1334 bp upstream
Tssr130400	transcription start site region 130400	1354 bp upstream
Tssr130401	transcription start site region 130401	1368 bp upstream
Tssr130402	transcription start site region 130402	1436 bp upstream
Tssr130403	transcription start site region 130403	1468 bp upstream
Tssr130404	transcription start site region 130404	1508 bp upstream
Tssr130405	transcription start site region 130405	1528 bp upstream
Tssr130406	transcription start site region 130406	1559 bp upstream
Tssr130407	transcription start site region 130407	1593 bp upstream
Tssr130408	transcription start site region 130408	1629 bp upstream
Tssr130409	transcription start site region 130409	1638 bp upstream
Tssr130410	transcription start site region 130410	1659 bp upstream
Tssr130411	transcription start site region 130411	1715 bp upstream
Tssr130412	transcription start site region 130412	1790 bp upstream
Tssr133563	transcription start site region 133563	1258 bp downstream
Tssr133564	transcription start site region 133564	1330 bp downstream
Tssr133565	transcription start site region 133565	1378 bp downstream
Tssr133566	transcription start site region 133566	1384 bp downstream
Tssr133567	transcription start site region 133567	1631 bp downstream
Tssr133568	transcription start site region 133568	1702 bp downstream