rs232756526 SNP Detail

Summary

• ID
  rs232756526
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101898556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGGTAA ATGCGAGATC
  AGGGCCTGGG TACATCTATG TGGTTGGGGG AAGAGCCGGA AGGAGGCGAA TGTGGTCGAC
  ACTATGGCGA ATGTGGAAGA CAGTATGGGG AGTTCAGGTG AGGGAGAAGA CGTTAAGAGC
  TCTCAATCAT TACCGAAAGC CAGTACTCCA GCTGCCTCTC AAAGTCATGG AAGTTGTCAG
  Y
  GACTATCGGT ATAGTGGCCC TTTCCTTCCT CAGTTTATCC TCAAAATAAA AAAGGCCAGA
  TTGAGTCTGA TAGACACAAC AGACGTGTTC ACTAAATACC CGCTGTTGTA TGGGACAGGA
  ATAAAGAGGT TGGCTCAGAA AAATACAGAG AGGGAATGGG GATTCCCCCA CCGAGTCCTC
  AGCAGCAACA GTGTAGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353650	CHEV_7_109397863	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232756526					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101898556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	293 bp proximal
Rhog	ras homolog family member G	within coordinates
Rr652561	regulatory region 652561	1818 bp distal
Rr652562	regulatory region 652562	within coordinates
Rr652563	regulatory region 652563	729 bp proximal
Rr652564	regulatory region 652564	1572 bp proximal
Tssr2354	transcription start site region 2354	910 bp upstream
Tssr68327	transcription start site region 68327	1591 bp downstream
Tssr68328	transcription start site region 68328	271 bp upstream
Tssr68329	transcription start site region 68329	353 bp upstream
Tssr68330	transcription start site region 68330	871 bp upstream
Tssr73939	transcription start site region 73939	13 bp downstream
Tssr73940	transcription start site region 73940	63 bp downstream
Tssr73941	transcription start site region 73941	105 bp downstream
Tssr73942	transcription start site region 73942	193 bp downstream
Tssr73943	transcription start site region 73943	726 bp downstream
Tssr73944	transcription start site region 73944	737 bp downstream
Tssr73945	transcription start site region 73945	778 bp downstream
Tssr73946	transcription start site region 73946	974 bp downstream
Tssr73947	transcription start site region 73947	1117 bp downstream
Tssr73948	transcription start site region 73948	1142 bp downstream
Tssr73949	transcription start site region 73949	1178 bp downstream
Tssr73950	transcription start site region 73950	1227 bp downstream