rs232763484 SNP Detail

Summary

• ID
  rs232763484
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73101473 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCACCGGG TTAAACAAAC
  AGCGGTGCAA GCTGCAGCTT CGGCGGGGGT GGCGGTGGGG GGGCGGACGC CGCTCGCGCC
  GGTCTCCGTT TCCAAAGTTG TTACAATGTG AAAATAAGCG GCTTCGTGCA GAGTGTTGTA
  TGGGCTGATG CTTCCCACCC CCACGCCAGC CCCCAGAAAA ACCTGGCAGA TAATCAGCAC
  R
  TCCCACTGTT TAGTCATATT TGACAACTGG GTTAACCTGG TATCTAGGCG CTGGCGAAGC
  CATACAAAGG GTGCCCTCAA TTACCACCAG GAGCTTCTGG TGTGATAGGC ACTTGTATTA
  CCCCCTGGGT CAGAGGCCAG AGCGACAATT AGGAAGTCAC TTAGACCGCT GGAGGGAAAT
  GGCGGGATGC AGCAGGCTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320344747	CHEV_2_73109186	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232763484					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73101473 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11766	CpG island 11766	within coordinates
Cpgi11767	CpG island 11767	171 bp proximal
Cpgi11768	CpG island 11768	1474 bp proximal
Rr406543	regulatory region 406543	1633 bp distal
Rr559116	regulatory region 559116	695 bp distal
Rr559117	regulatory region 559117	425 bp distal
Rr559118	regulatory region 559118	306 bp proximal
Sp9	trans-acting transcription factor 9	Intron
Tssr18369	transcription start site region 18369	797 bp upstream
Tssr18370	transcription start site region 18370	818 bp upstream