rs232765563 SNP Detail

Summary

• ID
  rs232765563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:25145908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTGGACG CCTGGTTCTG
  TCCAGGTCTC TGGTGATGCA GGCTGACGAT AGTGGGATGC GAGTCCAGGG CGATCTGCAG
  GTCCAAGATG TAATCGATGA CGTGCTGCAG GATTTCCATC TTGGTCACCT TCTTGTTCTG
  GGGGATGCTG GGCACCAGTT CCTTGAGCTT GGAGTAGCAG TCGTTCATGT TGTAGAGCAG
  R
  CTCATCGGGT CGTCCACCGG GGTTTTGCTC CGGGAGATGC CCAAGCTGTG GTCCGACAGG
  CTGTTTTTCC TAACGGACCT CACCGGACTG AAGGCTTTCA TGCTGCTCGT AGGAGGAAGA
  CCGGGAGGGA GCCGCCACAG GGGGCTGAGC TGACTGCGCG GCACCAGGCT CGGTTCAGAA
  TGAAGCGCGA GCCGGGCGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385325236	MGP_WTSI_12_25780774	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232765563					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385325236	MGP_WTSI_12_25780774	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:25145908 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4500	CpG island 4500	within coordinates
Gm59395	predicted gene, 59395	551 bp upstream
Id2	inhibitor of DNA binding 2	within coordinates
Rr403250	regulatory region 403250	153 bp upstream
Rr463954	regulatory region 463954	168 bp proximal
Rr463955	regulatory region 463955	562 bp proximal
Rr463956	regulatory region 463956	1221 bp proximal
Tssr112979	transcription start site region 112979	170 bp downstream
Tssr112980	transcription start site region 112980	528 bp upstream
Tssr112981	transcription start site region 112981	543 bp upstream
Tssr112982	transcription start site region 112982	1519 bp upstream
Tssr115883	transcription start site region 115883	1379 bp upstream
Tssr115884	transcription start site region 115884	116 bp upstream
Tssr115885	transcription start site region 115885	171 bp downstream
Tssr115886	transcription start site region 115886	1330 bp downstream