rs232778473 SNP Detail

Summary

• ID
  rs232778473
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115168748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATATTTT ATTACATTAT
  TTATGGGGGC CGGTGTACAC TTGCCACAGC GTTCGCGTGG TGTGTGGTAG TCAGAGGACA
  GCTTATAGGA GTTGGTTCCC TCCTCTACGT GAATTCCTGG GTTTCAGACT CATTTAAGGC
  TGAGGGCAAG CAACTTTACC CTCCAGCCGA CCCACACATG TTTTCTACAC AAGAACAGGA
  S
  CTGAAGAAGG GTGAATGCTT AATGTGCACA TGATCCTGGT TTCGATTACA CCACAAAAAA
  TATAATTAAA ATAAGGGCAG GACCCATTGT CACCTCTAAC CAGACAAGCC CAGTGCTTCT
  CTGAGAGTCC TTCTCCTTCT TGGAAGACTA ACCTGTCATC CTCACAACAT CTGATTCTTG
  TTTATTCTTG TTGAAGATTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323862217	CHEV_11_115139236	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232778473					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115168748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4117	CpG island 4117	461 bp distal
Fads6	fatty acid desaturase domain family, member 6	1700 bp downstream
Fdxr	ferredoxin reductase	872 bp upstream
Gm74405	predicted gene, 74405	within coordinates
Rr231868	regulatory region 231868	1853 bp proximal
Rr246090	regulatory region 246090	within coordinates
Rr403113	regulatory region 403113	585 bp downstream
Tssr105852	transcription start site region 105852	493 bp downstream
Tssr111738	transcription start site region 111738	1016 bp upstream
Tssr111739	transcription start site region 111739	979 bp upstream
Tssr111740	transcription start site region 111740	950 bp upstream
Tssr111741	transcription start site region 111741	938 bp upstream