rs232787633 SNP Detail

Summary

• ID
  rs232787633
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129158530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGAAAGG AAGCAAAATT
  GTGTTTCTTG TGTTTCAAAC TGTCTATGCT CCATTATATT GTGTTCCTTT ATTTTCCTTT
  TCCCCCTCAT TCCTGTTTCT TCACATTAAT TTTTTTTTTT TTAATTTGTG GAAAGACTAC
  TGAATTTTGA GAAAGTAAGA TTGACATCTA TCAAAATACA AAATTCCCAA CAAATGCTAA
  T
  GTTTATCACT TAAACCAAGT ATTCTGAAAT AATAATAATA ATAATAATAA TAATAAATTA
  TAATAAATTA TTATTACTGA GGATGATGAT GACTGACTGA CTGATTGATT GATTGATTGA
  TTCTTTGGCA AAGTCTCATA CTTTACCCCA AGCTGGCCTG GAACTCCTGC TCCCTCTGCC
  TCAGCAGGGT TGACTTTTTA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370045194	MGP_WTSI_6_129131585	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232787633					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370045194	MGP_WTSI_6_129131585	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129158530 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	within coordinates
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	1202 bp downstream
Rr368193	regulatory region 368193	178 bp downstream
Rr639387	regulatory region 639387	942 bp distal
Rr639388	regulatory region 639388	1075 bp distal
Rr639389	regulatory region 639389	157 bp distal
Rr639390	regulatory region 639390	77 bp proximal
Rr639391	regulatory region 639391	924 bp proximal
Rr639392	regulatory region 639392	1215 bp proximal
Tssr59096	transcription start site region 59096	937 bp downstream
Tssr59097	transcription start site region 59097	911 bp downstream
Tssr59098	transcription start site region 59098	628 bp downstream
Tssr59099	transcription start site region 59099	599 bp downstream
Tssr59100	transcription start site region 59100	554 bp downstream
Tssr59101	transcription start site region 59101	260 bp downstream
Tssr59102	transcription start site region 59102	206 bp downstream
Tssr59103	transcription start site region 59103	285 bp upstream
Tssr59104	transcription start site region 59104	355 bp upstream
Tssr59105	transcription start site region 59105	1111 bp upstream
Tssr59106	transcription start site region 59106	1135 bp upstream
Tssr59107	transcription start site region 59107	1365 bp upstream
Tssr59108	transcription start site region 59108	1431 bp upstream
Tssr59109	transcription start site region 59109	1544 bp upstream
Tssr63546	transcription start site region 63546	1266 bp downstream