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rs232792546 SNP Detail
Summary
  • ID
    rs232792546
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr3:93351663 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGCAGGAGCT AAGGCGCGAG
CAGGAGTTGA GGCAGGAACT GAGGCGCGAG CAAGAGCTAA GGCGCGAGCA GGAGTTGAGG
CAGGAACTGA GGCGCGAGCA AGAGCTAAGG CGCGAGCAGG AGTTGAGGCA GGAACTGAGG
CGTGAGCAAG AGCTAAGACG CGAGCAAGAG CTGAGGCAGG AGCTGGCTGA GGAGGACGAG
S
TGACGCGGAT CCGGGAACCC GACGAGAGCA TTACCCAGAG GTGGCAGTGG CAGCTCGAAA
ACGAGGCAGA CGCCCGTCAG AACAAGGTCT ACTCTAGGCC TAGCAGGCAG GAGCAGAGGC
TTCGCCAGGA GCTGGGGGAG CGTCAGCTCC GGGAGCAGGA GGAGCAGCGC CGCGACCTCC
AACAGGAGCG TCCCGCTGAG                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss358876320 MGP_WTSI_3_93248278 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232792546 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss358876320 MGP_WTSI_3_93248278 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:93351663 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cpgi13475 CpG island 13475 within coordinates
Gm37245 predicted gene, 37245 within coordinates
Gm56800 predicted gene, 56800 within coordinates
Gm66249 predicted gene, 66249 within coordinates
Tchh trichohyalin within coordinates
Tssr960 transcription start site region 960 926 bp downstream
Tssr961 transcription start site region 961 350 bp downstream
Tssr962 transcription start site region 962 767 bp upstream
Tssr963 transcription start site region 963 804 bp upstream
Tssr964 transcription start site region 964 900 bp upstream
Tssr30345 transcription start site region 30345 1967 bp downstream
Tssr30346 transcription start site region 30346 1942 bp downstream
Tssr30347 transcription start site region 30347 883 bp downstream
Tssr30348 transcription start site region 30348 863 bp downstream
Tssr30349 transcription start site region 30349 851 bp downstream
Tssr30350 transcription start site region 30350 807 bp downstream
Tssr30351 transcription start site region 30351 783 bp downstream
Tssr30352 transcription start site region 30352 733 bp downstream
Tssr30353 transcription start site region 30353 714 bp downstream
Tssr30354 transcription start site region 30354 699 bp downstream
Tssr30355 transcription start site region 30355 680 bp downstream
Tssr30356 transcription start site region 30356 626 bp downstream
Tssr30357 transcription start site region 30357 571 bp downstream
Tssr30358 transcription start site region 30358 453 bp downstream
Tssr30359 transcription start site region 30359 427 bp downstream
Tssr30360 transcription start site region 30360 397 bp downstream
Tssr30361 transcription start site region 30361 72 bp downstream
Tssr30362 transcription start site region 30362 56 bp downstream
Tssr30363 transcription start site region 30363 78 bp upstream
Tssr30364 transcription start site region 30364 149 bp upstream
Tssr30365 transcription start site region 30365 184 bp upstream
Tssr30366 transcription start site region 30366 236 bp upstream
Tssr30367 transcription start site region 30367 280 bp upstream
Tssr30368 transcription start site region 30368 297 bp upstream
Tssr30369 transcription start site region 30369 310 bp upstream
Tssr30370 transcription start site region 30370 317 bp upstream
Tssr30371 transcription start site region 30371 337 bp upstream
Tssr30372 transcription start site region 30372 350 bp upstream
Tssr30373 transcription start site region 30373 401 bp upstream
Tssr30374 transcription start site region 30374 419 bp upstream
Tssr30375 transcription start site region 30375 432 bp upstream
Tssr30376 transcription start site region 30376 458 bp upstream
Tssr30377 transcription start site region 30377 480 bp upstream
Tssr30378 transcription start site region 30378 513 bp upstream
Tssr30379 transcription start site region 30379 531 bp upstream
Tssr30380 transcription start site region 30380 611 bp upstream
Tssr30381 transcription start site region 30381 629 bp upstream
Tssr30382 transcription start site region 30382 688 bp upstream
Tssr30383 transcription start site region 30383 699 bp upstream
Tssr30384 transcription start site region 30384 708 bp upstream
Tssr30385 transcription start site region 30385 724 bp upstream
Tssr30386 transcription start site region 30386 745 bp upstream
Tssr30387 transcription start site region 30387 836 bp upstream
Tssr30388 transcription start site region 30388 862 bp upstream
Tssr30389 transcription start site region 30389 876 bp upstream
Tssr30390 transcription start site region 30390 948 bp upstream
Tssr30391 transcription start site region 30391 967 bp upstream
Tssr30392 transcription start site region 30392 985 bp upstream
Tssr30393 transcription start site region 30393 1002 bp upstream
Tssr30394 transcription start site region 30394 1022 bp upstream
Tssr30395 transcription start site region 30395 1047 bp upstream
Tssr30396 transcription start site region 30396 1096 bp upstream
Tssr30397 transcription start site region 30397 1113 bp upstream
Tssr30398 transcription start site region 30398 1188 bp upstream
Tssr30399 transcription start site region 30399 1235 bp upstream
Tssr30400 transcription start site region 30400 1720 bp upstream
Tssr30401 transcription start site region 30401 1740 bp upstream
Tssr30402 transcription start site region 30402 1839 bp upstream
Tssr30403 transcription start site region 30403 1879 bp upstream
Tssr34352 transcription start site region 34352 472 bp upstream
Tssr34353 transcription start site region 34353 466 bp upstream
Tssr34354 transcription start site region 34354 415 bp upstream
Tssr34355 transcription start site region 34355 318 bp upstream
Tssr34356 transcription start site region 34356 349 bp downstream
Tssr34357 transcription start site region 34357 394 bp downstream
Tssr34358 transcription start site region 34358 446 bp downstream
Tssr34359 transcription start site region 34359 515 bp downstream
Tssr34360 transcription start site region 34360 596 bp downstream
Tssr34361 transcription start site region 34361 617 bp downstream
Tssr34362 transcription start site region 34362 666 bp downstream
Tssr34363 transcription start site region 34363 693 bp downstream
Tssr34364 transcription start site region 34364 710 bp downstream
Tssr34365 transcription start site region 34365 724 bp downstream
Tssr34366 transcription start site region 34366 784 bp downstream
Tssr34367 transcription start site region 34367 917 bp downstream
Tssr34368 transcription start site region 34368 996 bp downstream
Tssr34369 transcription start site region 34369 1021 bp downstream
Tssr34370 transcription start site region 34370 1035 bp downstream
Tssr34371 transcription start site region 34371 1089 bp downstream
Tssr34372 transcription start site region 34372 1852 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory