rs232794744 SNP Detail

Summary

• ID
  rs232794744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:97096380 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGGGCTA CCATAGCAAG
  TTCTAGTCTA GCCAGGCTCA GAATGAGGTT GTTTCAGAAA CACAAAGAGG AGTTGGCAAG
  ATGGCTAGGG GTAAGGGTTT TTGCAACAAA GCTAGATGAG CTGAGTTCAA ATCTCCCCTC
  CTCACAGCAG GAGGGGGCAA ATCAGTGCCC ACAGTTGTGG TCAGACCTCC ACATACACAC
  Y
  GTGGCATGTA TATATCTATA CATATAAAGT GTAATACAAA TTTTCAAAAC TCCTATGGCT
  ACCTGAATTC CTGGAATTCT TTTTTTTTTT TTTTTTTTTC CTTTTTGAGG CAGGGTTTCT
  CTGTGTAGTC CTGGCTGTCC TCGAACTCAG AAATCTGCCT GCCTCTGCCT CTCAAGTGCT
  GGGATTAAAG GCGTGCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	SWR/J
ss384386174	MGP_WTSI_11_97066868	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	T	C	C	C	T	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MOLF/EiJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SPRET/EiJ	SWR/J
rs232794744					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	T	C	C	C	T	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384386174	MGP_WTSI_11_97066868	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:97096380 () rs orientation: forward

Symbol	Name	Function Class
Npepps	aminopeptidase puromycin sensitive	288 bp downstream
Rr455696	regulatory region 455696	1569 bp distal
Tssr110404	transcription start site region 110404	1447 bp downstream