rs232800309 SNP Detail

Summary

• ID
  rs232800309
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:113284372 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCCAGGAG CCCCCCCATT GTCCCGGCGG
  CACCGGGTTC CCAGGCCAGA AGATCCAAAA GCTCGGGAAA CGCGAAGGTG CTTGCGGAAT
  TGCGACGCTG GGGCACCGGC GGGACCAGGA GTGGCAGGGG TCAGCGCGGG AAGCCGGGGG
  R
  GCCGGGCCAG AGAGTGCGGG GCAGGAGCCG GGGCGGCCAG CTTCGCTTCC GAGAGTTCGG
  GTTTCCCCTT CTCGGCCCGT CTCTCATCGC CGGCCTCCCA CACGGGGTTG GAgccccggc
  gggcgccccc ggcgATGAGC CCAGACTGGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321910480	CHEV_6_113257405	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232800309					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113284372 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Brpf1	bromodomain and PHD finger containing, 1			Intron
				mRNA-UTR
Cpgi17838	CpG island 17838			within coordinates
Cpne9	copine family member IX			1840 bp downstream
Gm15492	predicted gene 15492			within coordinates
Gm43935	predicted gene, 43935			737 bp upstream
Gm67816	predicted gene, 67816			within coordinates
Rr399829	regulatory region 399829			738 bp downstream
Rr636483	regulatory region 636483			1765 bp distal
Rr636484	regulatory region 636484			within coordinates
Rr636485	regulatory region 636485			29 bp proximal
Rr636486	regulatory region 636486			484 bp proximal
Rr636487	regulatory region 636487			914 bp proximal
Tssr58189	transcription start site region 58189			434 bp downstream
Tssr58190	transcription start site region 58190			181 bp downstream
Tssr58191	transcription start site region 58191			165 bp downstream
Tssr58192	transcription start site region 58192			430 bp upstream
Tssr58193	transcription start site region 58193			456 bp upstream
Tssr62434	transcription start site region 62434			356 bp downstream