rs232804641 SNP Detail

Summary

• ID
  rs232804641
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:59251912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCCCTTCA CTTCCCGAGG
  GGATTAGCAG CCGCTCACCT CTGCCTTGGG CCAATGGAAT TGCACCGCCT TTGGGGTCTG
  CTCAGCCTCT AGGGGTCTTC ACTCGGGAGG AGGGCGGGGC AGGTGACGCA GCTATAGCCT
  CGGCTTCTGG GAATGGGCGG GCCATCGACC CGGGACCACC AGCGCCAACC CAGGCTCGCC
  W
  GCGAGTTTGC TCCTCCTGTG CTGGTAAGCC CTGGGCTTTT CCTGTCTGGT GGCAGGCTCT
  GTGGCCCGGG CTGGCTCAGG GGCTACAAAT TCTTTCCTTT CGTGACCTCT CCCATCTCCT
  AACAGGGGGA GGGGGAACCT AGACATAAAA ATAGGAGAGG TACTATTGCA GGGAAGGAAA
  AGGATTAAGC TTGGGTGGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358117613	MGP_WTSI_3_59148413	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232804641					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358117613	MGP_WTSI_3_59148413	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59251912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13208	CpG island 13208	within coordinates
Gm38186	predicted gene, 38186	within coordinates
Igsf10	immunoglobulin superfamily, member 10	mRNA-UTR
Rr577348	regulatory region 577348	343 bp distal
Rr577349	regulatory region 577349	223 bp distal
Rr577350	regulatory region 577350	108 bp distal
Rr577351	regulatory region 577351	within coordinates
Tssr33412	transcription start site region 33412	500 bp upstream
Tssr33413	transcription start site region 33413	445 bp upstream
Tssr33414	transcription start site region 33414	415 bp upstream
Tssr33415	transcription start site region 33415	391 bp upstream
Tssr33416	transcription start site region 33416	326 bp upstream
Tssr33417	transcription start site region 33417	124 bp upstream
Tssr33418	transcription start site region 33418	69 bp upstream
Tssr33419	transcription start site region 33419	42 bp upstream