rs232825797 SNP Detail

Summary

• ID
  rs232825797
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:41384814 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACCACAT GTTGGTGGCT
  CAGCATTCTC AGGATGAGAA TAGAAGGGTT TGCCAAACCT GAGACCTCAG ATCATCTAGA
  TCTGCTTGCT TGCCTCCAGG AAGCCAGAAG TCCCACCTAT TCTCCCTAGC TCATTGGCTG
  CTGGCATCTT TATTGATGGA TCAACAACCA ATTAGTGAGT AGTACATTAG CATTAGAAAC
  A
  CCCCCCCCCC CCCTTACAGT GTAAGTGAAA AGTTTGTTTT ATTTTTGCTT TTTTTTCTTT
  TTTCTTCAGA GTTCAGTATC TTGGAATGTC CTTATAAGGT TCTGTTACCG GTTCAGTGAC
  ACGAGGCAAA ACGGAGGTTT TTCACCATGC TTTGGAGGGA GAAAAGATAA TGAGCTTTAT
  GAGATCTCAG GCAGAGTGGC                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
ss353727610	MGP_WTSI_2_41350322	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PWK/PhJ	SEA/GnJ	SM/J	SPRET/EiJ	WSB/EiJ	ZALENDE/EiJ
rs232825797					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353727610	MGP_WTSI_2_41350322	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:41384814 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
D2Mit371	DNA segment, Chr 2, Massachusetts Institute of Technology 371			386 bp proximal
Gm74545	predicted gene, 74545			121 bp upstream
Lrp1b	low density lipoprotein-related protein 1B			Intron
				Noncoding-Transcript-Variant