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rs232845059 SNP Detail
Summary
  • ID
    rs232845059
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr8:88198289 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTACAAAATG GTTCAGAAGG
AGAAGGCAGG AAACTGTCTC TGCGGATGCT CTCACAGGAA CCTTGGACAG TTTAAGGGGC
AGTGCAAGCC AAAGAGCAAT GTATGAGGCC CTGCTACCAC GTTCCCGGAG CAGTGGGAGC
TTATGCCACT GATTTCTGAC GCTTGCTTCC ACAGAGCCCT ACTGCCAGGG ACCCCCTCTA
Y
TGCGACCCTG GCCCCCAGGT GGCAGCTGAC CTGGATGGTC TGTCTGTTGT AGACTTTCAC
CACGTGGAAG TTAAAACTGT AGATGCCTTT GCGCGGGGCG ATGAAAGTGC TGCGTTCTGA
GTCAAAGTTG TTCCCGATGT TCACTAGTAC CTACAAGAAG ACAGGAACGA AAAGGGGTAG
ACCGGAGTCC GCCCGAGCGT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss375466006 MGP_WTSI_8_89995560 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs232845059 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss375466006 MGP_WTSI_8_89995560 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:88198289 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Cbln1 cerebellin 1 precursor protein within coordinates
Cbln1os cerebellin 1 precursor protein opposite strand 1151 bp upstream
Cpgi20770 CpG island 20770 1970 bp distal
Cpgi20771 CpG island 20771 393 bp distal
Cpgi20772 CpG island 20772 within coordinates
Rr666962 regulatory region 666962 715 bp proximal
Rr666963 regulatory region 666963 840 bp proximal
Rr666964 regulatory region 666964 1293 bp proximal
Rr666965 regulatory region 666965 1379 bp proximal
Rr666966 regulatory region 666966 1667 bp proximal
Tssr2634 transcription start site region 2634 865 bp downstream
Tssr78595 transcription start site region 78595 1110 bp upstream
Tssr78596 transcription start site region 78596 1122 bp upstream
Tssr78597 transcription start site region 78597 1144 bp upstream
Tssr78598 transcription start site region 78598 1177 bp upstream
Tssr78599 transcription start site region 78599 1205 bp upstream
Tssr78600 transcription start site region 78600 1228 bp upstream
Tssr78601 transcription start site region 78601 1235 bp upstream
Tssr78602 transcription start site region 78602 1492 bp upstream
Tssr78603 transcription start site region 78603 1589 bp upstream
Tssr78604 transcription start site region 78604 1718 bp upstream
Tssr78605 transcription start site region 78605 1746 bp upstream
Tssr82308 transcription start site region 82308 1739 bp upstream
Tssr82309 transcription start site region 82309 1552 bp upstream
Tssr82310 transcription start site region 82310 1359 bp upstream
Tssr82311 transcription start site region 82311 1200 bp upstream
Tssr82312 transcription start site region 82312 1010 bp upstream
Tssr82313 transcription start site region 82313 984 bp upstream
Tssr82314 transcription start site region 82314 460 bp downstream
Tssr82315 transcription start site region 82315 500 bp downstream
Tssr82316 transcription start site region 82316 539 bp downstream
Tssr82317 transcription start site region 82317 704 bp downstream
Tssr82318 transcription start site region 82318 882 bp downstream
Tssr82319 transcription start site region 82319 915 bp downstream
Tssr82320 transcription start site region 82320 942 bp downstream
Tssr82321 transcription start site region 82321 954 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory