rs232847151 SNP Detail

Summary

• ID
  rs232847151
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:56299303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAGGCTAC TAATCAATCA
  GAGGCTCACA GGTCAGAAAG CTGAGTGTAG ACATAGCCTC TCTCCTCTCG GCCACCTACT
  GACGCACATG TGACACAACA GCCACACCTG CAATGCCTCT AGGACGTGGA CATTGATTCT
  TAAAAGACAA CATTTTACAG TGCATCACTC AGATAGACAG ACCGGCTGAT TGCCACATTT
  W
  AAAAAAAAAA AAAAAAACCT CAAACGATAA TATATTTTAA TTATGTTTGG TAGATAACTA
  TGGCAATTGA CCTAAATCAA TTAAATACAG GGATAGGGCC AGTGTTTAAA ACATGGCCAC
  TACGGTGCTT TCTTGTAGAT TGTTTTCGTT AGCCTGGATG GATGCTGAGG ATGTGATTCT
  GGCTCTATCC AGCAGGTTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324047698	CHEV_12_57353505	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232847151					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:56299303 () rs orientation: forward

Symbol	Name	Function Class
Gm19990	predicted gene, 19990	725 bp upstream
Gm25917	predicted gene, 25917	74 bp upstream
Gm47682	predicted gene, 47682	within coordinates
Rr256861	regulatory region 256861	within coordinates
Rr260934	regulatory region 260934	1703 bp distal
Rr267727	regulatory region 267727	within coordinates
Rr267728	regulatory region 267728	1698 bp proximal
Tssr113509	transcription start site region 113509	629 bp upstream
Tssr113510	transcription start site region 113510	670 bp upstream
Tssr113511	transcription start site region 113511	710 bp upstream
Tssr113512	transcription start site region 113512	732 bp upstream