rs232851538 SNP Detail

Summary

• ID
  rs232851538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90397177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTGTTTTT TCTCTGTGTA
  GCCCTGGAAC TTGCTCTGTA GACCAGGATG GCCTCAAACT CAGAAATTTG CCTGCTTATA
  TGTCCAGCTG GCTTTGGCTC TTTTCAAGCC AGCCCTTTAC GTTAAAATGG ACTTGTAAAT
  GACAGCCACT AGAAGTTAAG AATTAGAAGT TAAGAATTGG CACTTGTCTA GTTTGAGGCC
  Y
  AGTAATGGGG TGAGGGGAAT ATGGGCCTTT ATTATCAGAT TAGTTAACAC CACTCTTTTC
  CCCCATAGTT GCTTCACAGT GTTGAAGACA TAAAGCAGGA TAAACAAGAA GAAATTTTTT
  TGAAAGAGGG TCATGCTATG TAGCCCTAGC TGATTTGATA GTCCAGGCTC TGCTCAAAGT
  TCAAGCCATC CTTCTTGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358833309	MGP_WTSI_3_90293792	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs232851538					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358833309	MGP_WTSI_3_90293792	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90397177 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13464	CpG island 13464	882 bp proximal
Ilf2	interleukin enhancer binding factor 2	1491 bp downstream
Rr397812	regulatory region 397812	1128 bp upstream
Rr580375	regulatory region 580375	1153 bp proximal
Rr580376	regulatory region 580376	1168 bp proximal
Rr580377	regulatory region 580377	1280 bp proximal
Rr580378	regulatory region 580378	1604 bp proximal
Snapin	SNAP-associated protein	Intron
Tssr944	transcription start site region 944	1933 bp downstream
Tssr34231	transcription start site region 34231	713 bp upstream
Tssr34232	transcription start site region 34232	847 bp downstream
Tssr34233	transcription start site region 34233	912 bp downstream
Tssr34234	transcription start site region 34234	1105 bp downstream