rs232856079 SNP Detail

Summary

• ID
  rs232856079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173421864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTGTAACA GGAAATTCAG
  TATATGACCT TGAAGTTTGT TTTTAGGAAG AAGCTCCTGT GTCCCACGGG CTCCCCACCA
  CTTCGCTGTA TTCAAACCAG AGAACACAGA GCAGGGCAGA AACAGGTCCA GACCCATAAT
  CAAACGTTTA CAGAACACAG AATCATTAAT TAATGAAAAA TGTTTAAACT GTACAGCATC
  Y
  TTTTGTTCAT CTGAAATTCA AAACTAGGAA ATCTAAGTTC TGTGTACTTA AGCCAATGTA
  GAGTACATAA CTCCCCAAAT CAATGGAATC TGTAGAAAGT TCTCGTTAAA AGTATGGCTT
  CTTTTCTTAT CTTTCTTCTT TCTTTCCTTT TTTCTTTCTT TCTTTTTTAT TTTTGAGTCT
  AAAGTATAAC CAGTATCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320625299	CHEV_2_173405572	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232856079					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173421864 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	1798 bp upstream
Cpgi12846	CpG island 12846	1256 bp distal
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	792 bp downstream
Ppp4r1l-ps	protein phosphatase 4, regulatory subunit 1-like, pseudogene	1128 bp downstream
Rr571986	regulatory region 571986	1240 bp distal
Tssr27995	transcription start site region 27995	1891 bp upstream
Tssr27996	transcription start site region 27996	1872 bp upstream
Tssr27997	transcription start site region 27997	1860 bp upstream
Tssr27998	transcription start site region 27998	1793 bp upstream
Tssr27999	transcription start site region 27999	1737 bp upstream